<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33456

Description Serine/threonine-protein kinase SSN3
SequenceMENYRQYPYASAGQPMRVASTDFFTIGPYRRRRDQARVSVVQKYEILGYIAAGTYGKVYKARGKTKELGNGLYAIKKFKTDSKDNEVTHYTGISQSAIREMSLCKELEHKNISRLIEIILERKCIYMVFEFAEHDLLQIIHYHSQPDHKQIPEQTLKSAMYQILEGLSFLHQNWVLHRDLKPANIMVTNDGVVKIGDLGLARKFSNPLQSLYSGDKVVVTIWYRAPELLLGARHYTPAIDLWAVGCILAELLSLRPLFKGEETKMDNKKQVPFQENQVIKILEILGTPTLDKWPSLNSYPEYPHLSKISTFPSNLKAWYQSNGGSNKNCLRLLASLLEYDPAKRIDALESLDHKWFQEAPKPVDNIFANSPFKYPQRKIQKDDNDILGGTSQTYYNGKRAFGAYEDPRKRR
Length411
PositionKinase
OrganismOgataea parapolymorpha (strain ATCC 26012 / BCRC 20466 / JCM 22074 / NRRL Y-7560 / DL-1) (Yeast) (Hansenula polymorpha)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Pichiaceae> Ogataea.
Aromaticity0.11
Grand average of hydropathy-0.518
Instability index49.99
Isoelectric point9.28
Molecular weight47317.70
Publications
PubMed=24279325

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IEA:UniProtKB-EC

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33456
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     315.22|      97|     214|      71|     168|       1
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   71-  168 (159.67/105.94)	GLYAIKKFKTDSKDNEVTHYTGIS..QSAIREMSLCKELEHKNISRLIEIILERKCIYMV..FEFAEHDLLQ.....IIHYHSQPDHKqIPEQTLKSAMYQILEGLS
  286-  391 (155.55/98.91)	GTPTLDKWPSLNSYPEYPHLSKIStfPSNLKAWYQSNGGSNKNCLRLLASLLEYDPAKRIdaLESLDHKWFQeapkpVDNIFANSPFK.YPQRKIQKDDNDILGGTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33456 with CDK8 domain of Kingdom Fungi
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