<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33439

Description Uncharacterized protein
SequenceMATENVQGQAQAQAQAQVQAEKLNQALQHQLNLEGVRTRALDLFNTISRLLEIFDPISRANPNLRKWQDILGQFSMVNLELFHIVEEVKKVSKAFVVHPKNVNAENSTILPVMLSSKLLPEMESEETSMKEKLLHSLSHLPVSTQIERLKSRIDMIAAACDGASKAIADARKAYGLGSRQVPSMVPPIDKVQAAKIQEQEKLLKAAVNVGDGLRIPGDQKHLPSVLPAHLVDALSSGDGVHPKNPQAISTNNIGTQGTAIQNSYTQFGGRSVPSPSGGTSSIDNTSASPLPYANSPRSGTGMMNVPSPQQQSQQQQQHQRQKLMQLPQHQQQLISQQQLRQSASPGLSQNAVPQLHDFQVQNQQKFQQLHGQHQAQFSQPQSHQQLQNRPLQSAHIQHNIGQSQMSQANQLRSHLGQYTGTASTALFNAAQASTNSQMMPNMPAAISSQSILPRMQLGQRSHPSQMLNEQMFNMGATNSANMAQMQQQQQFGGVLTNTQNLQQGLVNLQNPQNSNYPQQRQPQQ
Length524
PositionHead
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.03
Grand average of hydropathy-0.642
Instability index61.30
Isoelectric point9.60
Molecular weight57607.14
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33439
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.03|      16|      18|     302|     317|       2
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  302-  317 (33.77/13.06)	MMNVPSPQQQSQQQQQ
  505-  520 (24.26/ 7.07)	LVNLQNPQNSNYPQQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.25|      18|      18|     465|     482|       4
---------------------------------------------------------------------------
  465-  482 (33.45/19.64)	QMLNEQMFNMGATNSANM
  484-  501 (32.80/19.10)	QMQQQQQFGGVLTNTQNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.78|      17|      18|     263|     279|       5
---------------------------------------------------------------------------
  263-  279 (32.26/17.49)	SYTQFGGRSVP...SPSGGT
  281-  300 (25.52/12.46)	SIDNTSASPLPyanSPRSGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.32|      23|      41|     167|     189|       6
---------------------------------------------------------------------------
  167-  189 (41.42/26.33)	IADARK......AYGLGSR......QVPSMVPP..ID
  196-  232 (20.90/ 9.86)	IQEQEKllkaavNVGDGLRipgdqkHLPSVLPAhlVD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33439 with Med8 domain of Kingdom Viridiplantae
Unable to open file!