<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33438

Description Uncharacterized protein
SequenceMGAPKDVWESILDVTKSSQLKGEAPLLWALHVCKLLNSSAVSLPSVDLAHLLVSHICWSNNVPQAWKFLEEAITSKLVPPIVVLSLLSSRVIPSRCFHPEAYRLYIELLKRHSFSFSSQFNGPHYLKLLKSVDDALHLSQTYGIQAAGLGEVVVEFVFTVVSLLLDAILEDEGLLDLKLDKRFTPTIAQQDIMEIDVESIDGRRRDYCEKLRKLNTSLTIELIGQFLQHRLTSSLLRLACQNMPMHWGGFIQRLQLLESKTSSLRNIAPGTISLLSAYAQRIFDREFKPSQHQATPALIDSGPLISSGHGHGASRSALWIPIDLFLEDAMDGSQVAATCAIEILADLVKSLQAVNGATWHETFLVLWMAALRLVQRERDPIEGPVPRLDARLCILLSITTLAIVDIIEEEEELLNGNVETNSNVLRKEKVVGKRRRDLITCLQMLGDFEGLLAPPQSVVCVANQAAAKAMMFVSGLKVGSGYFDGISVNDMPVNCAGNMRHLIVEACIARNLLDTSVYYWPGYVKGHMNQISHTMPGQMPGWSALMKGAPLTQLMVNALVSTPASSLAELEKISDIAISGSDDDRISAAMILCGASLIRGWNIQEHAVRLVVRLLSPPAPADYCGNESHLIASGPLLYCVLTGIASVDSVHVFSLHGMVPELAGTLMPICEAFGSCAPSITWRLSTGEQISVHMVFSTAFILLLRLWRFNRPPLEHTALGKGAPVGSQLTPEYLLLVRNSQLASSGKDRNNNPREQFRIRRLSTTGNPPNTQPIFVDSFPKLKIWYRQHQACIASTLSGLVRGTPVHQIVDALLNMVFRKLNKGGNQSITPVTSGSSSISSSSGPGGEDLSQKPMLPAWEILEAVPFVVDAALTACSHGRLSPRELATGLKDIVDFLPASVATMVIYFCSEVTRGVWKPASMNGTDWPSPAANLSTVEAELKKIVGTTGVDVPSPVAGSNSSSTLPLPLAAFVSLTITFKLDKASECFLNLAGPALENLAAGCPWPSMPIVAALWTQKVKRWNDFLTFSASRTVFQQCNNAVSQLLKSCFYATIGPSNAPLSTNGGVGSLLGHGFGSHSPNGLSPVAPGILYLRIYRSIHDIMFVTQEILSLVISSVEDIATNGMDREGMAKLSKAKYGMRYGQLSFGMAMVRVKQAAALGASLLSLSGGSGLVQMLFQETLPTWFLSGEPSVQKKSEGKAGLLMGYALAYFVVLCGAFTWGIDSRSVLMRRKRVIGSHMEFLAGILDGKISVGCDRATSRAYVSAFVGLVVSCVPKWVVEVELETLKRLSRGLRLWNENELALALLERGGFRAMGAAAELIMGYQV
Length1327
PositionTail
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.07
Grand average of hydropathy0.177
Instability index40.58
Isoelectric point7.90
Molecular weight144189.65
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33438
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     185.72|      37|     172|     544|     582|       1
---------------------------------------------------------------------------
  544-  580 (59.75/31.09)	AL.MKG.APL.TQ.LMVNALVSTPASSLAE..LEKISDIAISG
  718-  746 (40.90/17.98)	AL.GKG.APVgSQ.L.......TPEYLL....LVRNSQLASSG
  761-  794 (34.57/13.16)	RLsTTGnPPN.TQpIFVD...SFPKLKIWY..RQHQACIA...
  799-  835 (50.50/24.66)	GL.VRG.TPV.HQ..IVDALLNMVFRKLNKggNQSITPVT.SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     260.87|      80|     331|     298|     382|       2
---------------------------------------------------------------------------
  298-  382 (125.95/90.77)	LIDSGPLISSGHGHGASRSALWIpIDL......FLEDAMDGSQVAATCAIEILADLVKSLQAVNGATWHETFLVLwmaaLRLVQRERDPIE
  630-  715 (134.92/82.30)	LIASGPLLYCVLTGIASVDSVHV.FSLhgmvpeLAGTLMPICEAFGSCAPSITWRLSTGEQISVHMVFSTAFILL....LRLWRFNRPPLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     257.75|      62|     127|     895|     957|       3
---------------------------------------------------------------------------
  895-  957 (106.54/71.61)	DFLP...ASVATMVIYF....CSEVTRGVWKPASMN...GTDWPSpAANLST...VEAELKKIVGTTGVDVPSPVA
  963- 1013 (53.66/29.57)	STLPlplAAFVSLTITFkldkASECFLNLAGPALENlaaGCPWPS.........................MPIVAA
 1024- 1087 (97.55/60.37)	DFLT...FSASRTVFQQ....CNNAVSQLLK.SCFY...ATIGPS.NAPLSTnggVGSLLGHGFGSHSPNGLSPVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.12|      31|     219|     178|     213|       4
---------------------------------------------------------------------------
  178-  208 (58.02/49.22)	KLDKRF.....TPTIAQQDIMEIDVESIDG.................RRRDY..C
  387-  441 (32.10/14.85)	RLDARLcillsITTLAIVDIIEEEEELLNGnvetnsnvlrkekvvgkRRRDLitC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.24|      26|     792|     450|     478|       6
---------------------------------------------------------------------------
  450-  478 (38.32/31.97)	GLLAPPQSVVCvaNQAAAKAMM..FVsGLKV
 1245- 1272 (41.92/24.32)	GILDGKISVGC..DRATSRAYVsaFV.GLVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.99|      31|     323|     837|     868|       7
---------------------------------------------------------------------------
  837-  868 (51.77/33.06)	SSISSSSGPGGEDLSQKPMLPAWeILEAVPFV
 1163- 1193 (55.22/31.24)	SLLSLSGGSGLVQMLFQETLPTW.FLSGEPSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33438 with Med33 domain of Kingdom Viridiplantae
Unable to open file!