<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33431

Description Uncharacterized protein
SequenceMSSQAWLSPEVQPSAPGVPPQPLTPGQTTTGGPPGPSPPIPRPQNDQPQESVRAKFVASPGYILPAPSFSYGVVSQNNNAPRASLPPQSTPLSAVSVQPPVPGHSATSGASFSYSVASHATTTSATASNPMQGGKPAGPTSAASLQPPVPGQSSVSVHPNSWDPERPVQNALAQARPPFLVRKGPPSTSGFSFSGNSQSVSSEDSQKHQASNSDASAAVAQEAKTSQPSSSTAQTTPLPAPSSTTSRPVSSSPNTYATPFYMPKAPPFPGPPRLPVTPGTPGPPGIALSAPQLSSSVNIRPSVIDTNSAIMRPNIASSAPGTSNAASVPITQTAQPPIYSPYPTLPGVVPPPQAMWMHPSQMGGLQRPPFLPYPGTFPGPFPMPLRPITVPPVAMPDSSQPPGVSPIGPPGGIPLADHGAGIQVTISEEQSPPPGIDKEKDTIDYTNKDDNAVSNEDTDQWTAHKTDTGAVYYYNALTGESTYEKPPGFKGEPDKVILQRTPVSWEKLVGTDWALVATNDGKKYYYNTKSKISSWQVPPEVAELRKKQEADAALKANAPVQNAGISSDKGSVSSSLSAPAINTGGREAMTFKSATAPVSSSALDLIKKKLQDSGMPVTSSALPSSTPVPTTSDANGQRVVDTTVKGQQSENSKDKLKVAQEVGHVSDSSSDSEDVDSGPTKEECVIQFKEMLKEKGIAPFSKWEKELPKILFDPRFKAIPGYTERRSLFEHFVRTRAEEERKEKRAAQKAAIEGFKQLLEGASEDINHKTDYETFKKKWGYDPRFVALDRKEREMLLNERYNCLQNIV
Length808
PositionUnknown
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.06
Grand average of hydropathy-0.599
Instability index61.03
Isoelectric point7.67
Molecular weight85702.68
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33431
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     623.53|      80|      80|     251|     330|       1
---------------------------------------------------------------------------
    2-   61 (72.33/16.80)	.SSQAWLSPEVQPSA...P.G.........................VP......PQPLT...PGqttTG.GPP.G...PSPPIP........R.....PQ.ND...QP.........QES....VRAKFV.......AS...PG.........
   62-  131 (65.73/14.64)	..........YILPAPSFSyG....................................VV...SQ...NN.NAP.RASL.PPQSTplSAVS.VQ.....PPVPGhsaTS.........GAS....FSYSVA.......SH..ATTTSATASNPM
  134-  238 (73.03/17.03)	GKPAGPTSAASLQ..PPVP.GqssvsvhpnswdperpvqnalaqarPP......FL.VR...KG...PP.STS.GFSFSGN..S..QSV..........SSED...SQkhqasnsdaSAA....VAQEAK.......TS..QPSSSTAQTTPL
  251-  330 (146.03/40.97)	SSPNTYATPFYMPKAPPFP.G.........................PP......RLPVT...PG...TP.GPP.GIALSAPQLS..SSVN.IR.....PSVID...TN.........SAI....MRPNIA.......SS..APGTSNAASVPI
  334-  372 (59.62/12.64)	AQP.....PIY....SPYP.T.....................................L...PG...VV.PP........PQ.....AMW.MH.....PSQM...............GGL....QRPPF.....................LP.
  373-  463 (76.77/18.26)	.YPGTFPGPFPMP.LRPIT.V.........................PP.....vAMPDSsqpPG..vSPiGPPgGIPLADHGAG..IQVT.ISeeqspPPGID..kEK.........DTI....DYTNKD.......DN..AVSNEDTDQWTA
  478-  560 (67.97/15.37)	TGESTYEK....P..PGFK.G.........................EPdkvilqRTPVS...WE...KL.VGT.DWALVATN.......D.GK.....KYYYN...TK.........SKIsswqVPPEVAelrkkqeAD..AALKANA...PV
  567-  634 (62.06/13.44)	SDKGSVSSSL...SAPAIN.T.........................GG......REAMT...FK...SA.........TAPVSS..SALDlIK.....KKLQD...SG.........MPV....TSSALP.......SStpVPTTSDA.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.55|      42|      66|     688|     730|       2
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  688-  730 (70.36/55.58)	FKEMLK..EKGIAPFSKWEKELPKILFDPRFKAIpGYTERRSLFE
  755-  798 (70.19/49.69)	FKQLLEgaSEDINHKTDYETFKKKWGYDPRFVAL.DRKEREMLLN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33431 with Med35 domain of Kingdom Viridiplantae
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