<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33429

Description Uncharacterized protein
SequenceMPSGWKPGMPIGIGDIAIVPPGWKPGDPVPLPPVVDVPVGWKPGDAVVLPKPAKEAVPMVQKPIVSNAPEPIQVNFVQLDINPDQDDYSSEYSNDVGCSEEDDEERELGVRISVG
Length115
PositionMiddle
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.05
Grand average of hydropathy-0.297
Instability index48.91
Isoelectric point4.09
Molecular weight12277.77
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33429
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.50|      14|      15|      19|      32|       1
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    2-   14 (24.60/ 7.97)	.PSGWKPGMPIGIG
   19-   32 (34.42/13.39)	VPPGWKPGDPVPLP
   37-   50 (30.48/11.21)	VPVGWKPGDAVVLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.65|      13|      15|      52|      64|       2
---------------------------------------------------------------------------
   52-   64 (23.30/10.50)	PAKEAVPMVQKPI
   69-   81 (23.35/10.53)	PEPIQVNFVQLDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33429 with Med4 domain of Kingdom Viridiplantae
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