<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33425

Description Uncharacterized protein
SequenceMAEKQLVVIVEGTAAMGPFWPSIQSEILEKIIRVFYGSDLSGQKLPGANVEFALIMFYSHGPYSDCLLQRSGWTRNLDLFLRWLSSISFSGGGFGEAAIGEGLSEALWICSNMTQSLEGHKHCILVAASNPHALPTPVPQLPKSLDQNGSSDGQKEIYLADAETVAKAFSQYSVSLSVISPKNLPKLRAIYNAAKRNSRVPDPAIDNTKYPHYLILLSDLFVEARAALRPGITNLPASQNQMKFDSSSVPSTVSGPPPATMPSANVSMMNRQPMPGSAVPIATVKVEATTVTPMSSMSGSSHLSSSILHGTSPNVPSIQTSSPPTTSQEMIGNVDAQEFKPVLTSGTTQSLRPVSSATANVSILNNLSQARQVMGNASLTGASNIGLQAMGGAPMPMHMSNMISTGMASTGVPPAQTVFSSAQSSITSVVGSQSLVGTTQVGQNTAVGNPNLTGNSNYTSAASNLTGNPNLSGNPSHSVSPPVGNLQGVVGMGQSIPPGMGQGNLSSGTQMGQQTGGLGINHNMLNSLGQAGMPSGMGTMIPTPGMTQQVQAGGLQPIGMNSGSANNMQIPQLASASQQPGQMRYIKMWEGSLSGQRQGQAVFICKLEGYRHMNSSETLAADWPPAMQIMRLISQDHMNNKQYVGKADFLVFRALNRHGFLDQLQEKKLCAVIQLQSQTLLLSVSDKASRLIGMLFPGFCPGGSGEALEDRGWKCMV
Length717
PositionUnknown
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.05
Grand average of hydropathy-0.130
Instability index48.92
Isoelectric point8.56
Molecular weight75526.20
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33425
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     268.60|      34|      34|     484|     517|       1
---------------------------------------------------------------------------
  362-  392 (35.23/13.08)	S..ILNNLS..QARQV........................MGNASLTGASNIGlQAMGG
  397-  447 (27.60/ 8.53)	M..HMSNMIstGMAST.....gVPPAqtvfssaqssitsvVGSQSLVGTTQVG.QNTAV
  448-  482 (38.89/15.27)	GnpNLTGNS..NYTSA......ASNL..............TGNPNL.SGNPSH.SVSPP
  484-  517 (62.88/29.60)	G..NLQGVV..GMGQS......IPPG..............MGQGNLSSGTQMG.QQTGG
  519-  552 (37.01/14.15)	G.iNHNMLN..SLGQA.....gMPSG..............MGTMIPTPG..MT.QQVQA
  553-  578 (31.53/10.87)	G..GLQP.I..GMNSG......SANN..............MQIPQLASASQ........
  605-  641 (35.45/13.21)	C..KLEGYR..HMNSSetlaadWPPA..............MQIMRLISQDHMN.NK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.52|      26|      43|     230|     255|       2
---------------------------------------------------------------------------
  230-  250 (31.17/11.63)	...........P.....GITNLPASQ....NQMKFDSSSVP
  251-  280 (41.63/17.89)	STVSG......P.....PPATMPSANvsmmNRQPMPGSAVP
  282-  316 (27.72/ 9.57)	ATVKVeattvtPmssmsGSSHLSSS......ILHGTSPNVP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33425 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGMPSGMGTMIPTPGMTQQVQAGGLQPIGMNSGSANNMQIPQLA
2) GTTQVGQNTAVGNPNLTGNSNYTSAASNLTGNPNLSGNPSHSVSPPVGNLQGVVGMGQSIPPGMGQGNLSSGTQMGQQTGGLGINHNMLNSLG
3) ITNLPASQNQMKFDSSSVPSTVSGPPPATMPSANVSMMNRQPMPGSAVPIATVK
4) SNIGLQAMGGAPMPMHMSNMISTGMASTGVPPAQTVFSSAQ
5) TTVTPMSSMSGSSHLSSSILHGTSPNVPSIQTSSPPTTSQEMIGNVDAQEFKPVLTSGTTQSLRPVSSATANVS
531
437
232
383
289
574
529
285
423
362










Molecular Recognition Features






MoRF SequenceStartStop




NANANA