<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33418

Description Uncharacterized protein
SequenceMEDQISGILRHSLERKDPPLIWAMEVSSALQESGVGLPSSELGHLLVSHLCWANNTPLLWKYIEHAVSSQLVSSLQLLALLTSRVIPQRLNQPEAYRLYLELVSRYAFSFLSTKAAPCKEKILKSVDDTLQLSHIFGVKVVELGQAVVLFLFSVISTLVDCTLEDWGLQGTAREKNGLYGTAGAGDMDIDVKGNIKGNKNDRLLEHRDHLRSMNSYAAIEVVGKLFESKKSSVLLRLVHHNLPEKYRGLLQRLQYLEAHKSKLPNMKVGTPLIGKLSGALQRVLERENQLNKCQVIRAMIDIGCSNSVLRHNFGVAHSASWISFDLYMENVMDGKQLPATSAIEILSELIKTLKVMNRASWQETFQSLWISALRLVQRERDPLEGPVPHLDARLCVLLSITPLAAARVIEEDMEDSSLINGGVTQNSGTTDEHGKDGNLPTSRRQGLISSLQVLGQFSGLLLPPPSVVPAANLAAAKAAGFVSDSFNGASRSDTSVKAVGDMRHLIVEACIARKLIDTSAYFWPGFVGRSVTPPRPDTTLPPVSPWSAFMKGDPLNTLKYALSMTPAASLAELEKIYHIALTGAEEERIAAARILCGASLIRGFNIQEHVVRFVVKLLSPPAPPDFTGPGSHLVSYTSMLQAVLFGLSSIDTVHILSLYGVIPEVAAALMPISETFGTLMPASDPKPSGGEENPAYMVFSCAFLFLLRLWKFYRPPHEHYIVGRGPPLFSGLTLEYLLLLHNGRVASNATKGTNEKTGKRENQHSIYIDSFPKLRAWYRQNQACIASTLSGLCSGNPVHQVANKILSMIYKKMNKGGVNGPNTPSSGSLSGSPRNGEDSGQRPMIPAWEVLEAIPFVLEAVLTACAHRKLSSRDLTTGLRDLVDFLPASIGTIISYFSAEVSRGIWKPVAMNGTDWPSPAANLLSIEAEMKEILAATGVELPSSYSGGLAQMTLPLPMAALVSLTITFKLDKSLEFIHSVVGPALESAASGCPWPSMPIIGALWAQKVRRWHDFIVFSCSRSVFKQDKDAIFQLLKSCFSAFLGPSGLVGLGGVGALVGNGVANRASWGGRMPVAPGFLFLRTCRTIHNVSFVTEAILKLVVETARDLSKLPEPLIGSSQRLRSCQVSLSGTAASVREAAMLGASLLCLAGGPQQVQLLYEETLPTWLLSGGPRAMGPQARRPILEGYAMAYLLVLCGCFMWGPTEESGPPGIAMVRRRARARVVGRHMEFLGGALDGEISSSMMEWVRAYVVSFLAVVVRMVPWWISEVESDVVRRVADGLRGLGEGELALALLERGGLGAMSCAAEMFMTGP
Length1314
PositionTail
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.07
Grand average of hydropathy0.099
Instability index43.27
Isoelectric point8.54
Molecular weight142732.81
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33418
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.51|      44|     153|    1003|    1079|       1
---------------------------------------------------------------------------
 1034- 1079 (68.86/74.12)	LLKSCFSAFLGPSGLVGLGGVgALVGNGVANRASwGGRMPVAPGFL
 1193- 1236 (82.65/30.13)	LLVLCGCFMWGPTEESGPPGI.AMVRRRARARVV.GRHMEFLGGAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     368.13|     127|     153|     240|     392|       2
---------------------------------------------------------------------------
  249-  392 (189.26/155.10)	LLQrLQYLEAHK........SKLPNMKV....G.TPLIGKlSGALQrVLERENQLNKCQViramidIGCSNSVL........RHNFGVAHSASWISfDLYmenvmDGKQLPATS..AIEILSELIKTLKVMNRasWQETFQSLWISAL.RLVQRER.DPLEGPVPHLDA
  397-  548 (178.87/93.88)	LLS.ITPLAAARvieedmedSSLINGGVtqnsGtTDEHGK.DGNLP.TSRRQGLISSLQV......LGQFSGLLlpppsvvpAANLAAAKAAGFVS.DSF.....NGASRSDTSvkAVGDMRHLIVEACIARK..LIDTSAYFWPGFVgRSVTPPRpDTTLPPVSPWSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.42|      52|     158|     785|     848|       3
---------------------------------------------------------------------------
  792-  848 (93.41/62.28)	LCSGNPVHQVAnkilsMIYKKMNKG.....GVNGPNTPSSGSLSGSPRNGEDSGQRPMIPA.W
  969- 1004 (36.17/11.04)	....................KLDKSlefihSVVGPALESAA..SGCPW.....PSMPIIGAlW
 1147- 1188 (75.84/32.93)	LCLAGGPQQVQ.....LLYE...............ETLPTWLLSGGPRAMGPQARRPILEG.Y
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.53|      18|     356|     566|     585|       4
---------------------------------------------------------------------------
  566-  585 (26.13/21.79)	PAASL....AELEKIyhIALTGAE
  919-  940 (26.41/14.21)	PAANLlsieAEMKEI..LAATGVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.83|      29|     153|      62|      97|       5
---------------------------------------------------------------------------
   39-   61 (34.04/15.53)	............SSELGHLLVSHLCWAN.NTPLLWK
   62-   97 (37.28/36.14)	YIEhavssqLVSSLQLLALLTSRVIPQRlNQPEAYR
   99-  117 (22.52/ 8.65)	YLE......LVSRYA.FSFLSTKAAP..........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33418 with Med33 domain of Kingdom Viridiplantae
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