<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33413

Description Uncharacterized protein
SequenceMAILKGNTIQMMKSSILILSVIFLSGFVFESFVKAEEAPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLVGEAAKNQAALNPERTIFDVKRLIGRRFSDKEVQRDMKFLPYKVVNKDGKPYIEVKIRENEVKVFSPEEISAMILGKMKETAESYLGKTIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDQRVMDYFIKLIKKKYNKDISKDNKAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNMDLFKKTMGPVKKALEDASLQKTDIQEIVLVGGSTRIPKVQQLLKDIFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGEETKDILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIKVYEGERSLTKDCRELGKFDLSGIPPAPRGVPQIEVTFEVDANGILNVRAEDKGTKKAEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYSMKSTINDKDKLADKIESDDKEKVETALKEALEWLDDNQTAEKEDFEEKLKEVEAVCNPIIKQVYEKSGGPGSSGSEDEEDTNDEL
Length671
PositionUnknown
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.06
Grand average of hydropathy-0.431
Instability index31.95
Isoelectric point5.07
Molecular weight74353.62
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
endoplasmic reticulum chaperone complex	GO:0034663	IBA:GO_Central
endoplasmic reticulum lumen	GO:0005788	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
endoplasmic reticulum unfolded protein response	GO:0030968	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
ubiquitin-dependent ERAD pathway	GO:0030433	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33413
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.08|      27|      27|     574|     600|       1
---------------------------------------------------------------------------
  550-  574 (31.93/23.14)	..QEEIERMVREAEEFAE..EDKKVKERI
  575-  601 (41.43/32.65)	DARNSLETYVYSMKSTIN..DKDKLADKI
  604-  628 (25.72/16.93)	DDKEKVET...ALKEALEwlDDNQTAEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.14|      41|     411|       3|      45|       3
---------------------------------------------------------------------------
    3-   45 (60.41/52.97)	ILKGNTIQMMKsSILILSVIFLS.GFVFESFVKAEEAPKlGTVI
  417-  458 (64.74/46.58)	ILSGEGGEETK.DILLLDVAPLSlGIETVGGVMTKLIPR.NTVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     266.11|      84|     290|     169|     253|       4
---------------------------------------------------------------------------
  169-  253 (131.55/67.83)	TAESYLGKTIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAA...IAYGLDKKgGEKNILVYDLGGGTFDVSILTIDNG
  460-  546 (134.56/65.90)	TKKSQVFTTYQDQQTTVSIKVYEGERSLTKDCRELGKFDLSGIPPAPRGVPqieVTFEVDAN.GILNVRAEDKGTKKAEKITITNDKG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33413 with Med37 domain of Kingdom Viridiplantae
Unable to open file!