<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33411

Description Uncharacterized protein
SequenceMEIQEEEETHIPQPLSPLTVAIVVNGNRDSKYAVKWALEKFIPEGRISFKLLHVRPRITRIPTPMGNFIPISKVREDVADAYRKEIEWRVSTMLLPFRQMCAQRQVEVEPLVIEGDDVAEAISEEANKSSFSKLVVGASSRNAITRKFKGPDLATRISECAPSFCTIYVVSRGKLSSVRVATSSPEESTELASDEAISFSESNSSSYPLRTVTGGSDTYLSEHRQFRSSSLPLQRHRAISTVNYSSGNSLSSSTEIGPHNSVSLGSEVDTLSHGFTDDASETSSYRTFQAENESWFYNRMSATDTQTEISLSECPEDLSFEVERLRIELRHAQGMYAMARDEAVDASRKAIELRNRQMEEVNRLKEIRLREEKAQELAKLEKGMCEAANREAEYARECVEREISERRDADNRALREAQVKHKIESLIACLEHQYQKFSWEEIVSATSSFSDSLKIGSGAYGSVYKCSLRHTMAAVKVLHSNEGHQAKHFQQELDILNRIRHPHLLLLLGACPDEGCLVYEYMENGSLEDRLLQKNGTPPLPWFDRFRIAWEVASALVFLHNSKPTPIVHRDLKPANILLDRNLTSKIGDVGLSTLLPSNISTISTAYKETSLVGTFCYVDPEYVRTGVVSSKSDLYAFGIIILQLLTAKPAMALANYVETALEGGKLEEILDLTAGKWPLEETQELALLALGCAELRRRDRPDLKTNVFPVLERLKEKADLSRGSIPQVHCVPPSHFICPIFQDVMENPCVAADGYTYEHRAIDKWLSMNDKSPMTNLPMPHKNLVPNFTLLSAIMEWKSGNQ
Length803
PositionTail
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.07
Grand average of hydropathy-0.375
Instability index46.11
Isoelectric point5.73
Molecular weight90254.31
Publications
PubMed=24357323

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33411
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.12|      41|      41|      44|      84|       1
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    9-   40 (23.26/ 9.89)	...............THIPQPLSPLtvaIVVNGNRDSkyaVKWALEK
   44-   84 (71.51/44.39)	EGRISFKLLHVRPRITRIPTPMGNF...IPISKVRED...VADAYRK
   87-  121 (53.35/31.40)	EWRVSTMLLPFRQMCAQRQVEVE......PLVIEGDD...VAEA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.20|      18|      22|     193|     210|       2
---------------------------------------------------------------------------
  193-  210 (32.38/19.90)	SDEAIS.FSESNSSSYPLR
  216-  234 (26.81/15.18)	SDTYLSeHRQFRSSSLPLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.83|      14|      22|     321|     340|       3
---------------------------------------------------------------------------
  321-  335 (21.51/10.82)	EVERLRIELRHAQgM
  345-  358 (23.33/15.40)	DASRKAIELRNRQ.M
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.89|      11|      16|     603|     613|       4
---------------------------------------------------------------------------
  603-  613 (17.07/12.31)	ISTAYKETSLV
  619-  629 (18.82/14.43)	VDPEYVRTGVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.25|      14|      16|     697|     710|       5
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  697-  710 (25.33/14.15)	RRRDRPDLKTNVFP
  714-  727 (22.93/12.21)	RLKEKADLSRGSIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.86|      14|      16|     378|     393|       6
---------------------------------------------------------------------------
  378-  393 (19.72/19.94)	AK..LEKGMCEaaNREAE
  395-  410 (18.14/10.50)	ARecVEREISE..RRDAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.20|      22|     521|     236|     259|       7
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  236-  259 (35.88/33.32)	HRAIStvNYSSGNSLSSSTEIG.PH
  760-  782 (40.31/29.94)	HRAID..KWLSMNDKSPMTNLPmPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.77|      18|     212|     570|     589|       9
---------------------------------------------------------------------------
  555-  572 (29.11/15.41)	ALVFLHNSKPTPIVHRDL
  575-  592 (27.66/22.70)	ANILLDRNLTSKIGDVGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33411 with Med32 domain of Kingdom Viridiplantae
Unable to open file!