<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33408

Description Uncharacterized protein
SequenceMGDGTRSNRPAWLQQYDLVGKIGEGTYGLVFLAKSKLASNKGKCIAIKKFKGSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHSDMSLYLAFDYAEHDIYEIIKHHREKVSQPIKEYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGDEQGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEVKATPNPFQLDQLEKIFKVLGHPTQEKWPTLVNLPCWQNDQQHIQSRKYDNPGLHSVVHLPQKTPAYDLLSKMLEYDPRKRVTAAQALEHEYFRIEPPPGRNALVPSQPGEKAVNYPARPVDTTTDFEGSTSVQASQPVSSGNAVSGSLAAPSVVAARPVPRQMPMVGMPRMPGAPGIAAFNLSSQASMAGLNPNNIPMPRAASQAHQQQLRRKDPGMGMPNTGYPQQKSRRF
Length466
PositionKinase
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.08
Grand average of hydropathy-0.363
Instability index42.95
Isoelectric point9.32
Molecular weight51738.87
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33408
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.68|      36|      42|     372|     407|       1
---------------------------------------------------------------------------
  335-  368 (40.86/17.64)	....NALV.PSQPG..EKAVnyPARPVDTTT............DFEGSTSVQA
  372-  407 (64.58/31.34)	VSSGNAVS.GSLAA..PSVV..AARPVPRQM............PMVGMPRMPG
  411-  454 (29.24/10.92)	IAAFNLSSqASMAGlnPNNI.....PMPRAAsqahqqqlrrkdPGMGMP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.61|      34|      44|     154|     190|       2
---------------------------------------------------------------------------
  154-  190 (49.54/49.01)	LVMGEGDEQGVVKIADFGLarIYQA..PLKPLSDnGVVV
  199-  234 (56.06/41.97)	LLLGAKHYTSAVDMWAVGC..IFAEllTLKPLFQ.GVEV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33408 with CDK8 domain of Kingdom Viridiplantae
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