<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33407

Description Uncharacterized protein
SequenceMMIAPLSKGWPRLGLWRAYAWRRTRENSRGKGPVPKGSFPEINWLHHANRVENFSCQDKHLISNFQYSLPNQNPFSEGKQPQRSMPCVVQRPETLPNMFQVKKNFDAVTRLLVKCKGYLRPGITAPVVQSRVSDTTASKKSYFTEDHQKTNSLCNSSYDYPNVASEEMKTRAPNLTGTMMAGVSQQHQRNLSSHVVASMDGRSISHVSDSLLGTEMSSTRTVMDKREFGHVDAEVTSTVTPGKPNMHVPPCNEFGETIFDAIDDDEILKSIDVDQIVLKHYEATGTPQPSLSNISPVSPVGNKGNIRYPNGCPPPPELNTKCNHNFEVSLCPKAALHLQEMKDRLITVSNELLDNATNLIPENSEKLRQERLQLNKQIQHLEKYLRCSGGDEERQRSHSLASTSTAGVFNPQTPHNVKMSNSYTIDPPRFDSPWCNPSPMPFFSVERSFDQSRYVERELFTRKFVEVNYTDGSCDSRWSLTSFPWTKKLEVNNKKVFGNHSFRPNQREVINATMSGHDVFVMMPTGGGKSLTYQLPALISPGITLVVSPLVSLIQDQIMHLLQANISAAYLSANMDWSEQQQIFRELASGCCTYKLLYVTPEKIAKSDVLLRHLADLHNRELLARIVVDEAHCVSQWGHDFRPDYQGLGILKQKFPTVPVLALTATATASVREDVVQALGLVNCVVFYQSFNRPNLRYFIIPKTKRCLEDIDKFIRDYHHDECGIVYCLSKIDCEKVAERLQELGHKAAFYHGSMEPQQRAYVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLQSSCVLYYSYSDYMRVKHMLVQGASEQNSSTYGSGRAPAINSGRILEANIENLLRMVSYCENDVDCRRLLQLAHFGEKFDPMNCRKTCDNCCKNITYIEKNVTDIAKQLVELVKSTGQRFSSAHILEVYRGSLSQQVKRYKHELLSLHGAGKPLSKGDASRILRHMVTEDFLVEDVKKSDTYGSVSSVLKVKEAKVQGILFGNCKITLRFAVPQKANKPEKPEVTPAKGQLQLGKTPKIYDSPTQPQSEADPKLSALLFSALRTLRTMLVKEAGEGVMAYHIFGNATLQEISERVPRTKEELLEISGIGKAKIKKYGDRLLETIESTLKEYHKSEKNVSGNYENIESYKRRRETSVTPTTNPLPNDDFFEDVSLSKKRVTDVDKNEIRDKFSSVAAEKWDMDCRDAGNKCVIDLDDSEMTDDHHGQGGRILPTWLNPKSKPGGSTSPLFEDYAFRSQT
Length1275
PositionUnknown
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.08
Grand average of hydropathy-0.528
Instability index50.17
Isoelectric point8.53
Molecular weight143815.84
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33407
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.22|      21|      22|     187|     207|       1
---------------------------------------------------------------------------
  180-  192 (15.37/ 6.22)	......MAG..VSQQHQRNLS
  193-  213 (35.52/24.64)	SHVVASMDGRSISHVSDSLLG
  217-  231 (19.34/ 9.85)	SSTRTVMDKREFGHV......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.72|      21|      23|    1101|    1121|       2
---------------------------------------------------------------------------
 1101- 1121 (33.50/21.10)	GNATLQEISERVPRTKEELLE
 1126- 1146 (33.22/20.86)	GKAKIKKYGDRLLETIESTLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.79|      36|     160|     456|     495|       3
---------------------------------------------------------------------------
  456-  495 (59.51/42.65)	ERELFTRKFVEvnytDGSCDSRWSLTSFPWTKKLEVNNKK
  619-  654 (65.28/37.52)	NRELLARIVVD....EAHCVSQWGHDFRPDYQGLGILKQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.65|      37|     160|     793|     839|       4
---------------------------------------------------------------------------
  793-  839 (59.40/62.98)	VIHHSLPKSIEGYHQEC....GrAGRDglqsscvlyYSYSDYMRV.KHM.....LVQ
  945-  991 (50.25/31.29)	VYRGSLSQQVKRYKHELlslhG.AGKP.........LSKGDASRIlRHMvtedfLVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.13|      18|      21|    1030|    1048|       7
---------------------------------------------------------------------------
 1030- 1048 (27.54/18.63)	PQKANKPEKPEvTPAKGQL
 1054- 1071 (32.60/17.97)	PKIYDSPTQPQ.SEADPKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.66|      21|      25|    1169|    1193|      11
---------------------------------------------------------------------------
 1169- 1193 (26.23/27.70)	RETSVtpTTNPLpnDDFFEDVSLSK
 1195- 1215 (34.43/19.62)	RVTDV..DKNEI..RDKFSSVAAEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.55|      12|      25|     280|     291|      12
---------------------------------------------------------------------------
  280-  291 (23.02/ 9.63)	HYEATGTPQPSL
  307-  318 (26.53/12.12)	RYPNGCPPPPEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.25|      15|      23|     555|     570|      13
---------------------------------------------------------------------------
  555-  570 (21.99/17.63)	QDQIMHLLqANISAAY
  580-  594 (29.26/18.55)	QQQIFREL.ASGCCTY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.86|      21|      23|     861|     883|      14
---------------------------------------------------------------------------
  861-  883 (34.07/27.16)	RILE.ANI.ENLLRMvsYCENDVD..C
  885-  909 (28.78/16.28)	RLLQlAHFgEKFDPM..NCRKTCDncC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.98|      17|      27|       5|      31|      15
---------------------------------------------------------------------------
    5-   22 (32.68/32.88)	PLSKG.WPRLGlWRAYAWR
   33-   50 (31.29/10.18)	PVPKGsFPEIN.WLHHANR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33407 with Med34 domain of Kingdom Viridiplantae
Unable to open file!