<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33403

Description Uncharacterized protein
SequenceMYSSIASMQQSSMSMSMQQHGSLPMMSIQTNMRNTIQPGVSTLDSTQGSSFNHVNQLQQHKRTVNATTAAAAASTASSTRTTVSASADAVAATSSFSFAGMETLKRHLPAGGPDGLSELRKIAARFEEKIFTSAEHQADYLRKISLKMLTMETKSTMGNSMASNSTGGNQNMQDQASIALQSQVRNQGQPMSMPLANQVQSRQQLLQQNLSTTIPSGAMQGSTNLPPALSTMSTLAQPAISNVISQSSSLQNSMTGLSQNSMTGTVGHGVVPNQNMFSNSQRPLQVRQHQLPQVSQQQPQNQQSHVVYQQQIHQQLMKQKLQQQQAHLQPSLLQQTHMQQQQQQQQQQQQQQQQQSLMQSSQQSSGLQSSQPSLQQAQSSQPSLVQQSILRQSQTQQSVPSSMLHQQQNSIVQQPNLPSQQQMGQQQPQQQQQQQQQQQAPPSNMNQMLGPQASNPPDLQQQQQRMLGQQNMLSNMQQMAQQNNVPNMHQQQQLGQQNSIPGLQQQQPSSVSQHQHNIHQLLHQPRVAQSQQASSTLLNQQGAQSQSQTSQQQLMSQLQAHQQQQQQQVMQQQPGSMQQDMHQRLQASGGLMQHQSGVDQKPLFQQQRGVAEAPSSSMDSTAQTGQSTAIDWQEEVYQKIKSLKEMYYAELNELFQKLVTKCQQQDTLVQPPLHSDQMEKLRHYKNLLERIIAYFQAPKSSLSSSFREKLPAFEKQILNILALFKQKKPTAQQMQVQQQQLQQQSGGQTQPMQQLQPQPQIPQIHQQQQHENHVNPIQQVNMQGSMPSMQQSSMSTQQHGSLPMMSTQPNMRNAIQPGVSTLDSAQGNSLNQLQQGAMSSLQPSGVGVGPLSQNSSGNPPQNLSTLKLQLQQRHIHQQLIQHKQQLMQQQQQQQPQLHHQQQQQQFQHQQMQKQQQATSHLQGHQIPQIHQMNDANNEMKVNPTLGVKPMFQQHHQLGGQRQTYHHQQLKPGSPFPASSPQLLQALSPQISQHSSPQIDQQNLLAPSLPKAGTPLQTASSPFVVPSPSTPLAPSPLPADSEKQQSSGVTTVSNSTNIGNQLQTVIPLNQVAQSMAIGTPGISASPLLAEFASLDGNQGNVPALLQGDKCTERPLERLMKVVSSMSAKAFSSSISDIGSVVGLIDRMAGSAPGNGSRAAIGEDLVAVTKCRLQARSLMSQDGSAAAKRMRRSMSSMPLNTVSSAGSVNNSFRELNCVESSEIESTATSRIKKPKVEVNQSLLEEIKEINQRLIDTVLDISDEDTDSAAAAAEGREGTVVRCSFNAVALSPSMKSQYAAAQVSPILPLRLLVPANYPKCSPILLDKLPVETCKEFEDLSSKAKSRFSVSVRDLSQPMSLGDMARTWDACARKVVAEYAHQSGGGSFSSRYGSWESCVSA
Length1397
PositionTail
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.03
Grand average of hydropathy-0.730
Instability index76.14
Isoelectric point9.34
Molecular weight153558.27
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33403
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     836.92|      87|      89|     329|     415|       1
---------------------------------------------------------------------------
  154-  215 (75.06/12.06)	KST.............MGNSMA.......SNST...GG...NQ.N......M.Q...........DQASIAL..QS..Q..V...RN....QGQPM..SMPLA.....NQ............................VQSRQQLLQ..Q...NL...STTI.P
  216-  313 (83.72/14.53)	SGA.............MQGSTNlppalstMSTL........AQPA......I.SNV........ISQSSSLQ..NS..MtgL...SQNSMTGTVGH..GVVPN.....QNmfsNS..QRP..lqvrQHQL.PQ.....VSQQQPQNQ..Q...SHvvyQQQI.H
  314-  354 (76.66/12.51)	QQL.............MK..QK..........L...QQ...QQAH......L.Q.........................................................................PSL.LQ..QTHMQQQQQQQQ..Q...QQ...QQQQ.Q
  355-  439 (144.80/31.95)	QSL.............MQSSQQ.......SSGL...QS...SQPS......L.QQAQ.......SSQPSLVQ..QS..I..L...RQSQTQQSVPS..SMLHQ.....QQ...NSIVQQP.nlpsqQ.Q.........MGQQQPQQQ..Q...QQ...QQQQ.Q
  440-  524 (93.22/17.24)	AP..............PSNMNQ.......MLGP...QA...SNPP.....dL.QQQQ.........QRMLGQ..QN..M..LsnmQQMAQQNNVPN...M.HQqqqlgQQ...NSI...P..........gLQ..QQQPSSVSQHQH..N...IH...QLLH.Q
  525-  578 (67.74/ 9.97)	PRV.............AQSQQA.......SSTL..................LnQQGA.......QS....................QSQTSQ..........Q.....QL...MS..................qlQAHQQQQQQQVM..Q...QQ...PGSM.Q
  579-  678 (75.40/12.15)	QDM.............HQRLQA.......SGGLmqhQSgvdQKPL......F.QQQRgvaeapsSSMDSTAQtgQStaI..D...WQEEVYQKIKSlkEMYYA.....EL...NELFQ..........KL.V....TKCQQQDTLVQ..P...PL...HSDQ.M
  679-  770 (69.47/10.46)	EKLrhyknlleriiayFQAPKS.....slSSSF...RE...KLPA......F.EKQI.......LNILALFK..QK.........KPTAQQMQVQQ..QQLQQ.....QS...GG.........qtQP..........MQQLQPQPQipQ...IH...QQQQ.H
  771-  827 (69.41/10.45)	ENH.............VNPIQQ.......VN.M...QG...SMPS......M.QQSS.......MS.....................TQQHGSLP....MMS...............TQPnmrnaiQPGV...................S...TL...DSAQ.G
  828-  907 (81.46/13.88)	NSL.............NQ..LQ.......QGAM...SS...LQPSgvgvgpL.SQNS.......SGNPP......................QNLST..LKLQL.....QQ...RHIHQQL...iqhKQQL........MQQQQQQQP..QlhhQQ...QQQQfQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.00|      34|      44|      27|      60|       4
---------------------------------------------------------------------------
   27-   60 (59.16/28.99)	SIQTNMRNTIQPGVSTLDSTQGSSFNHVNQLQQH
   74-  107 (50.85/23.86)	STASSTRTTVSASADAVAATSSFSFAGMETLKRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.93|      69|      82|     996|    1077|       5
---------------------------------------------------------------------------
  996- 1068 (103.85/59.47)	PQIDQQNLLAP..SLP..KAGTP..LQTASSpfvVPSPSTPLApSPLPADSEKQQSSGVTTVSNSTNIGNQLQTVIPLN
 1079- 1153 (101.08/57.95)	PGISASPLLAEfaSLDgnQGNVPalLQGDKC...TERPLERLM.KVVSSMSAKAFSSSISDIGSVVGLIDRMAGSAPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.61|      12|      15|    1299|    1310|       6
---------------------------------------------------------------------------
 1299- 1310 (21.06/11.90)	QVSPILPLRLLV
 1316- 1327 (22.55/13.24)	KCSPILLDKLPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.99|      18|      44|     908|     925|       8
---------------------------------------------------------------------------
  908-  925 (33.01/16.21)	HQQMQKQQQATSHLQGHQ
  926-  943 (28.53/12.72)	IPQIHQMNDANNEMKVNP
  954-  967 (27.44/11.88)	HHQLGGQRQ.TYH...HQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33403 with Med15 domain of Kingdom Viridiplantae
Unable to open file!