<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33400

Description Uncharacterized protein
SequenceMEAAATNPRTAKLPPRQNSRAALQDLFNLYLGRSYRNKGDDEAPRETPTKLQKRISALNRELPPRNEQFLFDFEQLQAQFPDQEHLRSVTESVIINLVVQCSSHAPQAEFLLFSLRALSDIGYINWDTFIPSLLSSVSSAEISVGQGNQAMTANNLAAHGNTPSSVAISTSTSFQSFNPSSPLPSLQGMGSPPQGSTDLAASVTQSPKPNDTGQQIGPRTNGSLRRTAFSWLRQLSCKIILIALECNLKPLTHAEIFQHMLNWLASWDQRQDGVEEFEVRLHEWLHSCLDVVWVLVEEDRCRIPFYELLRSGLQFMDNIPDDEALFTMVLEIHRRRDKVAMHMQMLDQHLHCPTFANLRFPAQTYPSLSGEPLANLRSAPLTYPSGLGEPLHGEDLAACIQRGSLDWERAIRCLKHALNTTPSPDWWRRVLVTAPCYRQQAQQQVSVPGIVFSSEMLCEVIIDRIMDLLKSSNSDNQAWQEWLIFSDLFHLVMKSGYIDFLDFVEKLTSRFAKGNQQIRSNHVTWLLVQIISTEIVMNTLNADPKKVDTMRKIVSFHKEDRSSDQNNVTPQGILLDFISSSLTSRVWSLTASIREYLNPEQLQKGKQIDEWWKQVKGERMLDFLNLDERSLGMFWVLSHTVGRTAWEAIMAYLNSVGVSELLQQGSMGQSGERMMVMREACPLPMSLFSGLSINSSLKLATQIEETLLFGQVIPSIAVVETYARLLLTLPHSLFRLHFNVLTQRAQTITNKPGVYLLLLEILNYRLLPLYRYHNKTKTLMYDVTKIISMTKAKRGEHRLFRLAENLCMNLILSIRDVFLVKKELKGPTDFTETLNRVAIISLAITIKTRGIAEIEHLLFLPPLLEQIMATSQHTWSEKTLRHFPPLVRDCLMGRMDKRSQAIQAWQQAETTVINQCRQLLSPSVDPSYVVTYINRSFPLHRQYLCAGTWMLMTGHPESINSANLGRVLRELSPEEVTSNIYTMVDVLLHHIQIELQHGHVIQDLLINASVNLTFFIWTNELLPLDILLLALTDRDDDPHALRLVVSLLLDRQDFQQRVKVFCMNRGLPEHWQNSGPLKRLELQKALGNHLSGKERYPTFFDDIVARMLPVIPLIIYRLIENDATDTADRVLATYSAFLAYHPLRFTFVRDILAYFYDHIPSKLIVRILNVLDYPKIPFSESFPQHIGPSNSGICPPPEYFASLLLGLVNNVIPPLNSKTRSGSTGDMTGSSSRSVPNKTQTTQSMPMSPMDGQKAFYQIQDPGTHTQLVLETAVIEILSLPVTASQIVSSLVQIVVHVQPTLIQSTTGVQGAGQSSGLPTSPSGGSTDSLNTTRSAASSTGISTSNFVSRSGYTCQPLSCLMIQACGLLLSQLPPAFHVQLYAEASRIIKDCWWLTDTSKSSRELDSAVGYALCDPTWAAQDNTSTAVGNTVALLHSFFSNLPQEWLEGTHAIIKHLRPVTSVAMLRIAFRIMGPLLPRFAFARQLFMKTLALLFNVMADVLGRNSQLSTPTEFAEISDLIDFLHHAVISEGQGTVQSNTKPRPETLTLCGKAVEMLRPELQHLLCHLKPDPNSSVYAATHPKLAQSSNQ
Length1590
PositionTail
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.08
Grand average of hydropathy-0.112
Instability index45.12
Isoelectric point6.74
Molecular weight178757.41
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33400
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.08|      16|      16|     357|     372|       1
---------------------------------------------------------------------------
  357-  372 (32.84/16.58)	NLRFPAQTYPSLSGEP
  375-  390 (32.24/16.15)	NLRSAPLTYPSGLGEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.85|      19|     966|     175|     194|       5
---------------------------------------------------------------------------
  175-  194 (33.79/22.19)	QSFnPSSPLPSLQGMGSPPQ
 1180- 1198 (40.06/22.15)	ESF.PQHIGPSNSGICPPPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     239.72|      82|     966|     468|     571|       6
---------------------------------------------------------------------------
  418-  448 (32.37/17.44)	.......................................................................................................................................LNTTP.SPDWWRRVLVTAPCYRQQAQQQVSVP
  477-  571 (123.96/129.68)	QAWQ..EWLIFSDLFHLVMKS...GYIdfldfVEKLTSRFAKGNQQIRSNhvTWLL...................................................................vqiistEIVMNTLNADPKKVDTMRKIVSFHKEDRSSDQNNVTPQ
  903-  951 (53.61/32.17)	QAWQqaETTVINQCRQLLSPSvdpSYV.....VTYINRSFPLHRQYLCAG..TWML...............................................................................................................
 1025- 1060 (29.78/ 8.59)	........................................................mtghpesinsanlgrvlrelspeevtsniytmvdvllhhiqielqhghviqdllinasvnltffiwtnellplDILLLALTDRDDDPHALRLVVSLL.LDRQDFQQRVKV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.63|      15|     467|     755|     769|       7
---------------------------------------------------------------------------
  722-  736 (26.24/15.97)	YARLLLTLPHSLFRL
  755-  769 (25.39/15.19)	YLLLLEILNYRLLPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.88|      12|      22|     857|     868|       9
---------------------------------------------------------------------------
  857-  868 (21.32/11.13)	LLFLPPLLEQIM
  880-  891 (23.56/13.19)	LRHFPPLVRDCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.51|      67|    1127|      77|     173|      11
---------------------------------------------------------------------------
   84-  152 (110.45/111.35)	EHLRSVTESVIINLVVQ.CSSHAPQAEF..........LLFSLraLSDIGYINWDTFIPSLLSSVSS.......AEISVGQGN.QAMT
 1455- 1540 (92.06/43.22)	KHLRPVTSVAMLRIAFRiMGPLLPRFAFarqlfmktlaLLFNV..MADVLGRNSQLSTPTEFAEISDlidflhhAVISEGQGTvQSNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.30|      56|    1127|     195|     257|      12
---------------------------------------------------------------------------
  195-  257 (80.93/75.23)	GSTDlAASVTQSpkpndTGQQIGPRTNGSLRRTAFSwLRQLSCKIILIA..LECNLKPLTHAEIF
 1325- 1382 (94.36/62.17)	GSTD.SLNTTRS.....AASSTGISTSNFVSRSGYT.CQPLSCLMIQACglLLSQLPPAFHVQLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.69|      26|      53|     590|     621|      13
---------------------------------------------------------------------------
  590-  621 (35.97/42.18)	TA..SIREYLN....PEQLQKGkqidEWwKQvKGERML
  644-  675 (38.72/23.11)	TAweAIMAYLNsvgvSELLQQG....SM.GQ.SGERMM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.85|      13|      46|      12|      29|      14
---------------------------------------------------------------------------
   12-   29 (19.57/20.13)	KLPPRQNsraalQDLFNL
   61-   73 (26.29/14.09)	ELPPRNE.....QFLFDF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33400 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KTRSGSTGDMTGSSSRSVPNKTQTTQSMPMSPMDGQKAFYQ
2) SPLPSLQGMGSPPQGSTDLAASVTQSPKPNDTGQQIGPR
1218
181
1258
219










Molecular Recognition Features






MoRF SequenceStartStop




1) NSRAALQDLFNLYLGRSYRNK
18
38