<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33400

Description Uncharacterized protein
SequenceMEAAATNPRTAKLPPRQNSRAALQDLFNLYLGRSYRNKGDDEAPRETPTKLQKRISALNRELPPRNEQFLFDFEQLQAQFPDQEHLRSVTESVIINLVVQCSSHAPQAEFLLFSLRALSDIGYINWDTFIPSLLSSVSSAEISVGQGNQAMTANNLAAHGNTPSSVAISTSTSFQSFNPSSPLPSLQGMGSPPQGSTDLAASVTQSPKPNDTGQQIGPRTNGSLRRTAFSWLRQLSCKIILIALECNLKPLTHAEIFQHMLNWLASWDQRQDGVEEFEVRLHEWLHSCLDVVWVLVEEDRCRIPFYELLRSGLQFMDNIPDDEALFTMVLEIHRRRDKVAMHMQMLDQHLHCPTFANLRFPAQTYPSLSGEPLANLRSAPLTYPSGLGEPLHGEDLAACIQRGSLDWERAIRCLKHALNTTPSPDWWRRVLVTAPCYRQQAQQQVSVPGIVFSSEMLCEVIIDRIMDLLKSSNSDNQAWQEWLIFSDLFHLVMKSGYIDFLDFVEKLTSRFAKGNQQIRSNHVTWLLVQIISTEIVMNTLNADPKKVDTMRKIVSFHKEDRSSDQNNVTPQGILLDFISSSLTSRVWSLTASIREYLNPEQLQKGKQIDEWWKQVKGERMLDFLNLDERSLGMFWVLSHTVGRTAWEAIMAYLNSVGVSELLQQGSMGQSGERMMVMREACPLPMSLFSGLSINSSLKLATQIEETLLFGQVIPSIAVVETYARLLLTLPHSLFRLHFNVLTQRAQTITNKPGVYLLLLEILNYRLLPLYRYHNKTKTLMYDVTKIISMTKAKRGEHRLFRLAENLCMNLILSIRDVFLVKKELKGPTDFTETLNRVAIISLAITIKTRGIAEIEHLLFLPPLLEQIMATSQHTWSEKTLRHFPPLVRDCLMGRMDKRSQAIQAWQQAETTVINQCRQLLSPSVDPSYVVTYINRSFPLHRQYLCAGTWMLMTGHPESINSANLGRVLRELSPEEVTSNIYTMVDVLLHHIQIELQHGHVIQDLLINASVNLTFFIWTNELLPLDILLLALTDRDDDPHALRLVVSLLLDRQDFQQRVKVFCMNRGLPEHWQNSGPLKRLELQKALGNHLSGKERYPTFFDDIVARMLPVIPLIIYRLIENDATDTADRVLATYSAFLAYHPLRFTFVRDILAYFYDHIPSKLIVRILNVLDYPKIPFSESFPQHIGPSNSGICPPPEYFASLLLGLVNNVIPPLNSKTRSGSTGDMTGSSSRSVPNKTQTTQSMPMSPMDGQKAFYQIQDPGTHTQLVLETAVIEILSLPVTASQIVSSLVQIVVHVQPTLIQSTTGVQGAGQSSGLPTSPSGGSTDSLNTTRSAASSTGISTSNFVSRSGYTCQPLSCLMIQACGLLLSQLPPAFHVQLYAEASRIIKDCWWLTDTSKSSRELDSAVGYALCDPTWAAQDNTSTAVGNTVALLHSFFSNLPQEWLEGTHAIIKHLRPVTSVAMLRIAFRIMGPLLPRFAFARQLFMKTLALLFNVMADVLGRNSQLSTPTEFAEISDLIDFLHHAVISEGQGTVQSNTKPRPETLTLCGKAVEMLRPELQHLLCHLKPDPNSSVYAATHPKLAQSSNQ
Length1590
PositionTail
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.08
Grand average of hydropathy-0.112
Instability index45.12
Isoelectric point6.74
Molecular weight178757.41
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33400
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.08|      16|      16|     357|     372|       1
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  357-  372 (32.84/16.58)	NLRFPAQTYPSLSGEP
  375-  390 (32.24/16.15)	NLRSAPLTYPSGLGEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.85|      19|     966|     175|     194|       5
---------------------------------------------------------------------------
  175-  194 (33.79/22.19)	QSFnPSSPLPSLQGMGSPPQ
 1180- 1198 (40.06/22.15)	ESF.PQHIGPSNSGICPPPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     239.72|      82|     966|     468|     571|       6
---------------------------------------------------------------------------
  418-  448 (32.37/17.44)	.......................................................................................................................................LNTTP.SPDWWRRVLVTAPCYRQQAQQQVSVP
  477-  571 (123.96/129.68)	QAWQ..EWLIFSDLFHLVMKS...GYIdfldfVEKLTSRFAKGNQQIRSNhvTWLL...................................................................vqiistEIVMNTLNADPKKVDTMRKIVSFHKEDRSSDQNNVTPQ
  903-  951 (53.61/32.17)	QAWQqaETTVINQCRQLLSPSvdpSYV.....VTYINRSFPLHRQYLCAG..TWML...............................................................................................................
 1025- 1060 (29.78/ 8.59)	........................................................mtghpesinsanlgrvlrelspeevtsniytmvdvllhhiqielqhghviqdllinasvnltffiwtnellplDILLLALTDRDDDPHALRLVVSLL.LDRQDFQQRVKV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.63|      15|     467|     755|     769|       7
---------------------------------------------------------------------------
  722-  736 (26.24/15.97)	YARLLLTLPHSLFRL
  755-  769 (25.39/15.19)	YLLLLEILNYRLLPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.88|      12|      22|     857|     868|       9
---------------------------------------------------------------------------
  857-  868 (21.32/11.13)	LLFLPPLLEQIM
  880-  891 (23.56/13.19)	LRHFPPLVRDCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.51|      67|    1127|      77|     173|      11
---------------------------------------------------------------------------
   84-  152 (110.45/111.35)	EHLRSVTESVIINLVVQ.CSSHAPQAEF..........LLFSLraLSDIGYINWDTFIPSLLSSVSS.......AEISVGQGN.QAMT
 1455- 1540 (92.06/43.22)	KHLRPVTSVAMLRIAFRiMGPLLPRFAFarqlfmktlaLLFNV..MADVLGRNSQLSTPTEFAEISDlidflhhAVISEGQGTvQSNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.30|      56|    1127|     195|     257|      12
---------------------------------------------------------------------------
  195-  257 (80.93/75.23)	GSTDlAASVTQSpkpndTGQQIGPRTNGSLRRTAFSwLRQLSCKIILIA..LECNLKPLTHAEIF
 1325- 1382 (94.36/62.17)	GSTD.SLNTTRS.....AASSTGISTSNFVSRSGYT.CQPLSCLMIQACglLLSQLPPAFHVQLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.69|      26|      53|     590|     621|      13
---------------------------------------------------------------------------
  590-  621 (35.97/42.18)	TA..SIREYLN....PEQLQKGkqidEWwKQvKGERML
  644-  675 (38.72/23.11)	TAweAIMAYLNsvgvSELLQQG....SM.GQ.SGERMM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.85|      13|      46|      12|      29|      14
---------------------------------------------------------------------------
   12-   29 (19.57/20.13)	KLPPRQNsraalQDLFNL
   61-   73 (26.29/14.09)	ELPPRNE.....QFLFDF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33400 with Med23 domain of Kingdom Viridiplantae
Unable to open file!