<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33397

Description Uncharacterized protein
SequenceMQRYTAASCGGGVSNSAVGGGSARDSTRADSSFSPNFSLNPRRSLQLTPYKLKCDKEPLSSRLGPPDFYPQTPNCPEETLTKEVLQSGYRETIDGIEEAREITLTQIGTLSKPVIVRCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGPLLIKSGVFPEQRPSGEDFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRHNVPLLRATWFIKVNYLNQVRPVPSGGPDKTQSNRTELWTKDVIDYLQHLLDEFLHNEGSHSVPHSRDHSPQTQLLGTGQHHGGDSIQVISDGEEPALQFKWWYMVQIIQWHYAEGLLLPSQIIEWVLSQLQENESLEVLKLLLPIVYNLIESIALCQSYVRMLVDISLRSLEELATWVSNPVDNSLRSYVASSLAELLQYLILNVPDTFVALDSFPLPSCVFPDSKNASALVTISPDVRKGQSGSAENFNKGTKKGRFVSGRQVAFRHVVSAIQIRAAHLTKAVSPGLQGHLEAKLVQSLDKTLILGDVRGAHNSVFEDVCDADAAEGWISEVSPNLQSCLKWIGIVSQSLIYSVFFLCEWATCDFRDFHTPPSSDVKVTGRKDISQVYMAVSLLKLKKEEICISLLNKDRSSPGASVPGKGSLLDKPLGNAALENPSMIKGSSRKSYGSTDSSDIFQSPGPLHEIVVSWLDQHDTGKGEGFKRLQVLIIELIRCGIFYPQAYVRQLIVSGIMDKVDTPADVDRRKRHIRILKQLPGHHLFDALEGTRVAEVLVSPEAVHQYSNERRLVLQGFMSHSRNENDGSSNFASQMQKDHHLNIGKDVFLSSSFDQRQNSQAVHSPLSGKSTIIKVGVAELKASISVLLQLPDLRHAWKDKLYPSQGNLKRPASSPGSCLEMGEGTPGCEECRKIKRHKLSDERSSYLQGYLSIPSDDEDTWWMKKGPKPLELAKIEQPVKPIKHTSRGRQRIVRKTQSLAHLGATRIESSQGASSSHVCENKINCPHHRSSLEGENPKIRNGLKAMRTGDIIALGKALKQLRVVEKWSITIWLRSMIKQLVEGREKANTNMGQSFGPFSPASDDKNAVRWKLGEDSLSSILYLLDVSSDLYSAVKILLWLLPKASSGPNLPVHSGRNISVLPGNKDGDSCEVGEAFLLSCLQRYENILIAVDLLPELLSAAMHRAMVAMTSHGRVSISAAFNYARVLLRRYGSVASVIKWEKNFKATCDQRLLAELESGRSLDSDLGFTLSGLPSGSEDFDDYFRQKISAGRLSRAGPSMKEIVQRHIGEAAHYIVGKERKLTALAPRSFTIEKWDEEYQSAHHIVSGVIDCIRQNGAGAQQVEVAAAVSAIVGNVGNATNNILELASSATYSGSASTLSSFSLNCARRIMQMHTCCLCLLKDALGERHTRAFEIALATEASSTIAGAFSPGKVPRSQFQLSPETSDTNSNLPNELMSSSAKIILGRPTKAAAAASALVIDSIIHGITNLERMVTVLKLKEGLDFIQVIRGTRSCSNGLPRSMGNYKADNSMEVSVHWFRLLAGNCRTVFDGLVAEFLGETAILAFSRLQRMLPLNLVFPPAYSVFAMVIWRPIIMNSHTATREDIQLYQSLSSAIGDVIRHQPFRDTCLRDTHALYVLLASDSCDSEFASMLEVQNIDKHVRIMAFVPLRARMFLNAVLDCRMPTNPLQDDGVWAHGHGESKVSTESELKLQNQLVHVLDTLQPAKFHWQWVELRLLLNEQVLIEKVDGHGISLTEALRSLLPNADNGELSEKEKTFTEIILTRLLVRPDAATLYSETVHLLGKSLEELLLLHAKWVLEGPEVLLGRKSLRHKLKNLAQTKGLSTKTQSCKPWGWSTSMLDATAKENDKRRLEATSLEEGEVVDDGLDTKKTGKQAFQGLEMDGFNSGQQFVTEKALADLVLPCLDRSSNDSRNTFASDLIKQLNNIEQQISLFTRVSGKQAAAAASGGEGSGNKGGARKGIRGGSPGLARRITGASESAPPSPSALQASMWLRLQLLLRLLPIIYADRDPSNRNMRHILTSVLLRLLGSRVVHEDSDLPFAPLPKYPQSKREPDSSLEAPLGASSFGLSGDSLFDRFLCVLHGLLSSYRPSWLKTKCSKLSAKSSRDFIPFDRELVERMQVELDHMQLPPTIRLRLQAAMPILPPTQPFSFSSQPPSPSITTLHSLHIGTPNPTFSPSALTPPPKAPVPSIRASTTSKSKPISQLDPDLEIDPWTLLEDGTGSASGSGSGSGSSSAGVGVDQANLKACPWLKGAVRVRRTDLTYVGTLDDDT
Length2276
PositionKinase
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.06
Grand average of hydropathy-0.267
Instability index50.41
Isoelectric point8.79
Molecular weight250824.52
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33397
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     699.78|     233|     812|     989|    1261|       1
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  989- 1261 (351.03/296.88)	HHRSSLEGenPKIRNGLKAMRTG.DIIALGKALK.QLRVVEKWSitiWLRSMI.................................KQLVEGREKANTNMGQSFGPFSPASDDKNAVRWKLGEDSLSSilYLLDVSSDLySAVKILLWLLPKASSGPNLPVHSGRNISvlpGNKDGDSCEV.GEafllsclqryeniliavdllpellSAAMHRAMVAMTSHGRVSISA..AFNYAR............................VLLRRYGSvaSVIKWEKNFK.ATCDQRLLAELESGRSLDSDLGFTLSGLpSGSEDFDDYFrqKISAGRLSRAGPS
 1796- 2095 (348.76/216.59)	HAKWVLEG..PEVLLGRKSLRHKlKNLAQTKGLStKTQSCKPWG...WSTSMLdatakendkrrleatsleegevvddgldtkktgKQAFQGLEMDGFNSGQQFVTEKALADLVLPCLDRSSNDSRNT..FASDLIKQL.NNIEQQISLFTRVSGKQAAAAASGGEGS...GNKGGARKGIrGG........................SPGLARRITGASESAPPSPSAlqASMWLRlqlllrllpiiyadrdpsnrnmrhiltsVLLRLLGS..RVVHEDSDLPfAPLPKYPQSKREPDSSLEAPLGASSFGL.SGDSLFDRFL..CVLHGLLSSYRPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.26|      56|     634|     630|     693|       2
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  630-  693 (82.49/79.20)	LLDKPLGNAAlenpSMIKGSSRK.......SYGSTDSSDIFQSPgplHEIVVSWLDqHDTGKGEGFKRLQV
 1265- 1327 (91.77/62.29)	IVQRHIGEAA....HYIVGKERKltalaprSFTIEKWDEEYQSA...HHIVSGVID.CIRQNGAGAQQVEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.58|      24|     635|      62|      94|       3
---------------------------------------------------------------------------
   62-   94 (32.52/42.07)	RLGPpdFYPQtpncpeeTLTKEVLQSGYRETID
  700-  723 (45.05/27.22)	RCGI..FYPQ.......AYVRQLIVSGIMDKVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.61|      19|      23|    2144|    2162|       4
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 2144- 2162 (38.92/26.44)	MPILPPTQPFSFSSQPPSP
 2170- 2188 (37.69/25.29)	LHIGTPNPTFSPSALTPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.59|      18|      22|     308|     329|       5
---------------------------------------------------------------------------
  308-  325 (36.32/23.99)	WYMVQIIQWHYAE..GLLLP
  331-  350 (26.27/ 8.02)	WVLSQLQENESLEvlKLLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.16|      17|      22|    1737|    1753|       7
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 1737- 1753 (28.35/16.64)	LTE.ALRSLLPNADNGEL
 1760- 1777 (23.81/12.72)	FTEiILTRLLVRPDAATL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     234.66|      75|     812|     791|     867|       8
---------------------------------------------------------------------------
  791-  867 (119.30/89.68)	SNFASQMQ...KDHHLNIGKDVFLSSS..FDQRQNSQAVHSPLSGKStIIKVGVAELKASISVLLQLPD.LRHAWkDKLYPSQ
 1629- 1709 (115.35/77.69)	SEFASMLEvqnIDKHVRIMAFVPLRARmfLNAVLDCRMPTNPLQDDG.VWAHGHGESKVSTESELKLQNqLVHVL.DTLQPAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.10|      45|     132|     742|     788|       9
---------------------------------------------------------------------------
  742-  788 (71.75/50.86)	PGHHLfDALEGTRVAEVLVSPEAvHQYSNERRLVLQGFMSHSRNEND
  877-  921 (84.35/50.81)	PGSCL.EMGEGTPGCEECRKIKR.HKLSDERSSYLQGYLSIPSDDED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.66|      12|      19|     365|     381|      11
---------------------------------------------------------------------------
  365-  376 (21.83/18.80)	YVRMLVDISLRS
  383-  394 (23.84/ 8.13)	WVSNPVDNSLRS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33397 with Med12 domain of Kingdom Viridiplantae
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