<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33396

Description Uncharacterized protein
SequenceMALETAIPVVQRPERLLEIPNRNLMESVGEIVPEPQPVSEEEVYVAVGKERKESLKTLQWTIQMFRNKKIILLHVHQPSQMIPTPMGNFPANKVKPIEVKAHRNKEQEDVKKLMNDYLALFSTAEVHVDKRVKEADDIQKGIVQAVAQYEIQKLIMGAAADNCYSRKMNAVTSKKAAHVKKHAPLSCMIFFICKGSLICTREPCAEQPSMWMNSPSPTLTPSTSPVISRQSSTGSVRESMNMRNLLSPWFRRRSKSEHLNIDVEESQSSLGGETVSGMGSIDGEAEIQPDLSGTVESRNGANSEEFASCVSFYPDPIEEPVLDSVEENDEEGSLSICPTDGTDDVMQSLHDQLRRSMEESKNLKREALNESVRCRQAEHVALEARCKAKILETKYEGELKLRIELDEVLNRERHKLEDLANQRDKFSKEVQEICKEKDALTCRIAELDQLVHDLTEKLREAEESLSRVSRENVEIQRQREDVLHQLEQYQKREGHSSGQESFCEFSVMELNIATRNFDGRLKIGQGGYGTVYKGRLRHTDVAIKVLDSGSLQGQSEFQQEVNVLSRVRHPNLVTLIGACSENSCLIYEFLPNGNLEERLCRRNDSPALSFQARIRIASEVCSALLFLHSATPHSIVHGDLKPSNILLSTNDSAKIGDFGICRLLEDSGGTLCWRTDPKGTFPYVDPEFLATGDLTHMSDVYSFGVILLQLLTGRSALGIIRDMHRALENGCLTEILDPTAGSWPFVQANQLAHLALRCCEMNRRSRPDLGSEIVRTVELLRATTDGTVVAGQPVGYPDKHGQVPTYFLCPIFQEIMNDPHVAADGFTYEGEALRGWFESDHDTSPMTNLKLPHLNLIPNRALRSAIQEWVQN
Length872
PositionTail
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.05
Grand average of hydropathy-0.447
Instability index51.75
Isoelectric point5.54
Molecular weight97938.03
Publications
PubMed=24357323

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33396
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.85|      22|      54|     400|     424|       1
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  352-  373 (31.11/15.60)	QLRRSMEESKNL........KREALNESVR
  400-  421 (35.39/17.94)	KLRIELDEVLNR........ERHKLEDLAN
  457-  484 (24.34/ 9.39)	KLR.EAEESLSRvsrenveiQRQR.EDVLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     365.32|     118|     157|     504|     642|       2
---------------------------------------------------------------------------
  504-  642 (181.53/164.04)	EFSVMelniatrnfdgRLKIGQGG...YGTVYKGRLRHTDVaiKVLDSGSLQGQSE.FQQEVNVLSRVRHPNLVTLI...GACSENSCLI.........YEFLPNGNLEE...RLCRRNDspalsfQARIRIASEVCSALLFLHSATPHSIVHGdlKP
  657-  793 (183.79/121.50)	DFGIC...........RLLEDSGGtlcWRTDPKGTFPYVDP..EFLATGDLTHMSDvYSFGVILLQLLTGRSALGIIrdmHRALENGCLTeildptagsWPFVQANQLAHlalRCCEMNR......RSRPDLGSEIVRTVELLRATTDGTVVAG..QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.25|      50|     120|     171|     227|       5
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  171-  227 (77.09/74.97)	VTSKKAAHVKKHAplSCMIFF..ICKGSLICTREPCAEQPSMwmnSPSPtlTPSTSPVI
  295-  346 (83.17/56.32)	VESRNGANSEEFA..SCVSFYpdPIEEPVLDSVEENDEEGSL...SICP..TDGTDDVM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33396 with Med32 domain of Kingdom Viridiplantae
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