<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33394

Description Uncharacterized protein
SequenceMGPGGPQNYGTPMSMQFRPMVPTQQSQPFISAPSQQFRPVGQGIPASNIGSPSPVQAQQAQYALGMQQLPPRPAQTAQVAPSPQTVPLSYIQPNRPMTSGPLQIPQNPQHVNIHPPGLGGPGTVLSSSYTFTAPSSYVHPQNNINISSQYQPSSQMQVPGVPSGSGGQPWLSSGSQSTTVIPPVVQASQQSSFAASTAPVATPQPNPTSQSSSDWQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPDELKLAREQAEKNGTQLTNSETTDVVASSTPVTVTVPLTEMPSTVAAISATQSAMPSTSGMATSPVLVTPVVSVPAAAVDPSSAGAAYEKIKVDNVSPESIAQVADETSAQDLEEARKAMPVAGKVNITPTSDEKTVDEEPLVFASKQEAKNAFKELLVSAHVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEEKRTRQKKAREDFVKMLEESKELTSATKWSKAITMFEDDERFRAVERGRDREELFEMHLEELHRKERAKAQEEHRRNVQEYRAFLESCDFIKASSQWRKVQDRLEDDERCARLEKIDRLEIFQEYIRDLEKEEEEQRKLQKEHLRRAERKNRDDFRKLMEGHIAAGILTAKTHWREYCMKVKDLPAYLAVSSNTSGSTPKDLFEDTAEELDKQYQEDRTRIKDAVKMARFVMTSTWSFENFKEAISEDNNLKSISETNLKLVFDELLERLKEKEEKEAKKRQRMADDLKDLLYSIKDISASSRWEECKPLLEENQAYRSINDESFARQIFEEYVAYLQEKIKEKERKREEEKARKEKEREEKEKRKEKERKEKERDRDREKKDRARRDEMDVENLDVINDFGHKDDKKREKEKDRRHRKRHQSAADELSSGKEEKEESKRSRRHTSDRKRSSRKQHGYESESGSESRHKRHRRDRDGSRRNEELEDGELGEDGEIH
Length985
PositionUnknown
OrganismAmborella trichopoda
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Amborellales> Amborellaceae> Amborella.
Aromaticity0.06
Grand average of hydropathy-1.104
Instability index60.90
Isoelectric point6.75
Molecular weight112911.48
Publications
PubMed=24357323

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33394
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     409.73|      65|      65|     707|     771|       1
---------------------------------------------------------------------------
  370-  433 (44.50/21.26)	..E.KIK...V.......D....................N....VSPE....SI.AQVADE....TSAQDLEEARK.AM........pvagkvnITPTSDekT....VD.....E...EPLV.FASK.QEAKN
  435-  519 (30.59/12.08)	FKElLVS...A.......HvesdwtwdqamrviindkryGALKTLGER.......KQAFNEYLGQRKKLEAEE....................kRTRQKK..AredfVK.....MleeSKEL.TSATkWS...
  520-  588 (49.91/24.84)	..K.AITmfeD.......D....................ERFRAVERGrdreEL....FEMHLEELHRKERAKAQE.EH...............RRNVQE..Y.rafLE.....S...CDFIkASSQ.W..RK
  589-  665 (67.12/36.20)	VQD.RLE...D.......D....................ERCARLEKI....DR.LEIFQEYIRDL.EKEEEEQRK.LQkehlrraerknrddfRKLMEG..H....I..........AAGI.LTAK.THWRE
  666-  729 (60.76/32.00)	YCM.KVK...DlpaylavS....................SNTSGSTPK....DL....FEDTAEEL.DKQ....................yqedRTRIKD..A....VK.....M...ARFV.MTST.WSFEN
  730-  795 (81.86/45.93)	FKE.AIS...E.......D....................NNLKSISET....NL.KLVFDELLERLKEKEEKEAKK.RQ.................RMAD..D....LKdllysI...KDIS.ASSR.W..EE
  796-  843 (46.08/22.31)	CKP.LLE...E.......N....................QAYRSINDE....SFaRQIFEEYVAYLQEK....IKE.KE...............RKREEE..K....AR........................
  844-  879 (28.91/10.97)	.KE..........................................KER....EE.K.......EKRKEKERKEKERdRD...............REK.KD..R....AR.....R...DEM............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.65|      37|      38|     215|     251|       2
---------------------------------------------------------------------------
  215-  251 (73.66/38.11)	WQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERAD
  256-  292 (71.99/37.10)	WKEFTTPEGRKYYYNKVTKQSKWTIPDELKLAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     107.03|      17|      17|       3|      19|       3
---------------------------------------------------------------------------
    3-   19 (36.16/19.98)	PGGPQNYGTPMSMQFRP
   54-   70 (25.98/12.30)	PVQAQQAQYALGMQQLP
   71-   87 (26.44/12.64)	PRPAQTAQVAPSPQTVP
  140-  152 (18.45/ 6.61)	...PQN.NINISSQYQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.04|      17|      21|     899|     919|       4
---------------------------------------------------------------------------
  899-  916 (25.20/12.18)	EKeKDRRHRKRHQSAAD.E
  960-  977 (21.84/ 7.27)	HR.RDRDGSRRNEELEDgE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     141.39|      28|     139|      21|      48|       5
---------------------------------------------------------------------------
   21-   48 (52.30/31.88)	VPT.QQSQPFISAPSQ........Q...FRP.............VGQGIPASN
   89-  123 (36.04/19.54)	SYI.QPNRPMTSGPLQipqnpqhvN...IHP.............PGLGGPGT.
  126-  160 (19.51/ 7.01)	....SSSYTF.TAPSS........Y...VH.pqnninissqyqpSSQ.MQVPG
  161-  189 (33.54/17.65)	VPSgSGGQPWLSSGSQ........SttvIPP.............VVQ...ASQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.07|      21|      22|     323|     343|       7
---------------------------------------------------------------------------
  323-  343 (35.87/24.43)	PSTVAAISATQSAM..PSTSGMA
  346-  368 (30.20/19.33)	PVLVTPVVSVPAAAvdPSSAGAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33394 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ESIAQVADETSAQDLEEARKAMPVAGKVNITPTSDEKTVDEEPL
2) IPDELKLAREQAEKNGTQLTNSETTDVVASSTPVTVTVPLTEM
3) KERKREEEKARKEKEREEKEKRKEKERKEKERDRDREKKDRARRDEMDVENLDVINDFGHKDDKKREKEKDRRHRKRHQSAADELSSGKEEKEESKRSRRHTSDRKRSSRKQHGYESESGSESRHKRHRRDRDGSRRNEELEDGELGEDGEIH
4) MGPGGPQNYGTPMSMQFRPMVPTQQSQPFISAPSQQFRPVGQGIPASNIGSPSPVQAQQAQYALGMQQLPPRPAQTAQVAPSPQTVPLSYIQPNRPMTSGPLQIPQNPQHVNIHPPGLGGPGTVLS
5) PQNNINISSQYQPSSQMQVPGVPSGSGGQPWLSSGSQSTTVIPPVVQASQQSSFAASTAPVATPQPNPTSQSSSDWQEHTSADGRRYYYNKKT
380
280
833
1
140
423
322
985
126
232










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYY
264
269