<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33353

Description Uncharacterized protein
SequenceMANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHLAPSSQPIPMPYIQTNRPMSSIPPHSQSVPPLSNHMPGLPVSGAAPHSSYTFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWLSSASQSVAPSTSVQPAGLQSSGATLTDAVTNATNQHSLSDWQEHTSGDGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNAAVSSIATSTATNAASLNPSLTSNGLASSPSSVTPIASTDSPQLVSGLFGTSVSQSTVTSSTTGVEPSSVGTTSAAPILVAGGSGLSENSPQLSKMPPIVENQASQDFASANGSSPQDIEEAKKALAEVGKNNVIPPEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVATGILTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFELVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDVACQTISDINLKLIFEELLERAKEKEEKEAKKRQRLADEFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKVHDFMSQVFVLLFFRKYLFVNKILLILRLQF
Length887
PositionUnknown
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.08
Grand average of hydropathy-0.769
Instability index55.27
Isoelectric point5.84
Molecular weight100644.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33353
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     472.00|      64|      66|     461|     524|       1
---------------------------------------------------------------------------
  410-  457 (25.84/10.47)	.............................IEEAKKALAE.VGKNNVIPPEEKTNDD.ETlvyankleAKNAFKALLES...V
  461-  524 (99.05/61.10)	SDWTWEQAMRE....IINDKRYNAL..KTLGERKQAFNEYLGQRKKLEAEERRMKQ.KR........AREEFTKMLEE...C
  529-  592 (88.60/53.88)	SSMRWSKAISM....FENDERFNAV..ERPRDREDLFESYMVELERKEKENAAEEH.RR........NIAEYRKFLES...C
  597-  669 (74.06/43.82)	VNSHWRKIQDR....LEDDDRYLRL..EKI.DRLLVFQDYIRDLEKEEEEQRRIQK.DR.vrrgerkNRDAFRKLLEEhvaT
  670-  727 (44.79/23.58)	GILTAKTQWREyclkVRDLPQYQAVasNTLGSTPKDLFELVAE....DLE.......KQ........YHEDKTLIKD.....
  738-  799 (72.47/42.72)	TTSVFEEFKAA....VLEDVACQTI..SDI.NLKLIFEELL.ERAK.EKEEKEAKKrQR........LADEFTNLLYT...F
  804-  860 (67.19/39.07)	TSSKWEDCKSL....FEETQEYRSI..GDESYSREIFEEYITYLKEKAKEKERKRE.EE........KVHDF..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.19|      37|      40|     198|     235|       2
---------------------------------------------------------------------------
  198-  234 (75.02/43.74)	WQEHTSGDGRRYYYNKRTRQSSWEKPLELMSPIERAD
  239-  275 (72.17/37.99)	WKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.69|      34|      34|      14|      47|       3
---------------------------------------------------------------------------
   14-   47 (66.81/38.13)	PVIQAQQ.GQPFVPMNSQQFGPAGHAIP....SSNAGMP
   85-  112 (45.48/23.60)	..IQTNR.PMSSIPPHSQSVPPLSNHMP........GLP
  145-  182 (41.40/20.81)	PQMLAPPgGQPWLSSASQSVAPSTSVQPaglqSSGATL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.36|      32|      34|     307|     338|       4
---------------------------------------------------------------------------
  279-  299 (24.45/12.50)	.........NQGMQSETSDTPNAAVSS...IAT
  307-  338 (56.09/39.92)	SLNPS.LTSNGLASSPSSVTPIASTDSPQLVSG
  343-  373 (40.83/26.70)	SVSQStVTSSTTGVEPSSVG..TTSAAPILVAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33353 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHLAPSSQPIPMPYIQTNRPMSSIPPHSQSVPPLSNHMPGLPVSGAAPHSSYTFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWLSSASQSVAPSTSVQPAGLQSSGATLTDAVTNATNQHSLSDWQEHTSGDGRRYYYNKRT
2) QSTVTSSTTGVEPSSVGTTSAAPILVAGGSGLSENSPQLSKMPPIVENQASQDFASANGSSPQDIEEAKKALAEVGKNNVIPPEEKTNDDETLV
3) SIPEELQLAREQAQKAANQGMQSETSDTPNAAVSSIATSTATNAASLNPSLTSNGLASSPSSVTPIASTDS
1
346
262
215
439
332










Molecular Recognition Features






MoRF SequenceStartStop




NANANA