<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33350

Description Uncharacterized protein
SequenceMANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHLAPSSQPIPMPYIQTNRPMSSIPPHSQSVPPLSNHMPGLPVSGAAPHSSYTFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWLSSASQSVAPSTSVQPAGLQSSGATLTDAVTNATNQHSLSDWQEHTSGDGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNAAVSSIATSTATNAASLNPSLTSNGLASSPSSVTPIASTDSPQLVSGLFGTSVSQSTVTSSTTGVEPSSVGTTSAAPILVAGGSGLSENSPQLSKMPPIVENQASQDFASANGSSPQDIEEAKKALAEVGKNNVIPPEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVATGILTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFELVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDVACQTISDINLKLIFEELLERAKEKEEKEAKKRQRLADEFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKVKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTEVHGYKEEKKKEKDKERKHRKRHQSSLDDVDSEKEDKEESKKSRRHGSERKKSRKHANSPESDTENRHRRHKREHWDVSRKTGGHEELEDGELGDDVEN
Length1000
PositionUnknown
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.06
Grand average of hydropathy-1.108
Instability index56.06
Isoelectric point6.14
Molecular weight114375.58
Publications









Function






Annotated function


GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33350
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     242.53|      61|      65|     869|     932|       1
---------------------------------------------------------------------------
  567-  634 (65.26/29.88)	.ERKE...K......ENAAEEHRRNiaeyrkfleSCDYVKVNSHWR...KIQDRLEDD.DRY...LRLEKidrllvfQDYI.RDLE
  870-  932 (96.02/50.78)	KEKKE...KDREREKDKSKERHRKD.........ETDSDNQDMTEVHgyKEEKKKEKDKERK...HRKRH.......QSSL.DDVD
  935-  999 (81.25/40.49)	KEDKEeskKSRRHGSERKKSRKHAN.........SPESDTENRHRRH.....KREHWDVSRKtggHEELE.......DGELgDDVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     129.81|      19|      20|      64|      82|       2
---------------------------------------------------------------------------
   64-   82 (42.21/24.39)	TPRPMQPGH.....LAPSSQPI.PM
   87-  104 (22.11/ 9.14)	TNRPM..SS.....IPPHSQSVpPL
  108-  119 (19.27/ 6.99)	M.....PG......L.PVSGAA.PH
  125-  147 (24.78/11.17)	TPSYGQ.QHdnanaLAQYQHPP.QM
  149-  164 (21.45/ 8.64)	APPGGQP.W.....LSSASQSV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     320.33|      64|      66|     430|     495|       3
---------------------------------------------------------------------------
  452-  518 (95.39/51.58)	ALLESV.N....VQ..SDWTWEQAMREIIN........DKRYNAL..KTLGE.RKQAFNEYL.gqrKKLEAEER.....RMKQKR..AREEFT
  519-  563 (57.74/27.94)	KMLEECkE....LT..SSMRWSKAISMFEN........DERFNAV..ERPRD.REDLFESYM...............................
  661-  730 (64.17/32.38)	KLLEEH.VatgiLT..AKTQWREYCLKVRD........LPQYQAVasNTLGStPKDLFELVAedleKQYHEDKT.....LI.......KDTIK
  748-  793 (47.79/26.93)	AVLEDV.A....CQtiSDINLKL.................................IFEELL....ERAKEKEE.....KEAKKRqrLADEFT
  794-  865 (55.24/26.89)	NLLYTFkD....IT..TSSKWEDCKSLFEEtqeyrsigDESYS..........RE.IFEEYItylkEKAKEKERkreeeKVKKEK..EREE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.19|      37|      40|     198|     235|       4
---------------------------------------------------------------------------
  198-  234 (75.02/51.79)	WQEHTSGDGRRYYYNKRTRQSSWEKPLELMSPIERAD
  239-  275 (72.17/44.95)	WKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.87|      28|      30|       2|      31|       5
---------------------------------------------------------------------------
    2-   31 (50.85/35.86)	ANNSQPSSMQFRPVIQAQQGQPFVPMnsQQ
   35-   62 (55.02/32.82)	AGHAIPSSNAGMPVIQGQQLQYSQPM..QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      26.96|      14|      18|     355|     369|       6
---------------------------------------------------------------------------
  311-  326 (16.40/ 6.17)	SltSNGLAS.SPS......SVTP
  359-  379 (10.55/ 6.10)	S..SVGTTSaAPIlvaggsGLSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33350 with Med35 domain of Kingdom Viridiplantae
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