<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33343

Description Uncharacterized protein
SequenceMNQIGGTKDPEAEPVAQSLPQPQDTPKPPDKTDSATVVAATSTEEQEVGPEEKPVPMEEDLVNPATVFSIRLKQSRSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQSSQGPANLVHDTSCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSAPANSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSKNGMIPKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQIAPKTSTTCAVPPLSPSNWAGFAPLAAYLFSWQDYLLSEAKQGKKQTDQNLLDAVPLYCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSLGGQSPMQTVWQSKVDLSITPTNDFKNHQSPAIGMTSDVQKVSESVSDKSKRVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHVFSGPSFTPVDNYQINVGSAIAAPAFSSTSCCSASVWHDSSKNCTILRIIRVLPPSIPISQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALINSSALVPEPWQASGETLSSIDPETMAVEPALIPSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPATSQGGQNGTSSSMGSAQLQTWVQGAIAKISNTTDGGSNPTPNPISGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYMGLANRTSDANTQKPQSNTPAPGKVEEIAKPVSAVVKSDDGQTGRAGAKGAEEVPSGRSRLGSGNAGQGYTFEEVKVLFMMLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDQEDVDCANDAPKLVNSDPLDFSSLEHCDVYYGTHRLWPRKRRMSERDAAFGLNISVGLGGYLGIMGSRRDVVTATWKTGLEGVWYKCVRCQRQTSAFASPDASPSLTPNDREVWWISRWVHGCPMCGGTWARVV
Length1241
PositionTail
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.08
Grand average of hydropathy-0.202
Instability index48.39
Isoelectric point6.33
Molecular weight134544.61
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33343
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.01|      27|      29|     477|     505|       1
---------------------------------------------------------------------------
  479-  505 (50.09/27.94)	PI..FGNPTS.SLGGQSPMQTVWQSKVDLS
  508-  537 (33.92/12.13)	PTndFKNHQSpAIGMTSDVQKVSESVSDKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.27|      11|      29|     210|     220|       2
---------------------------------------------------------------------------
  210-  220 (24.49/16.04)	KWLSGVS..PYRW
  238-  250 (16.79/ 8.25)	KFLSQQSqtSARW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.06|      37|     526|     578|     674|       3
---------------------------------------------------------------------------
  579-  623 (58.62/104.43)	SGPS.FTPVdnyQINVGSAIAAPAFSSTSCCsasvwHDSSKNCTIL
  884-  921 (67.44/18.65)	SGPStFMPI...SINTGTFPGTPAVRLIGDC.....HFLHRLCQLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.85|      23|     526|     647|     674|       4
---------------------------------------------------------------------------
  647-  670 (42.89/24.41)	RAIAERFWWSLLVGVdWWDAVGCT
 1176- 1198 (43.97/20.71)	RDVVTATWKTGLEGV.WYKCVRCQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.79|      10|      15|     169|     178|       5
---------------------------------------------------------------------------
  169-  178 (19.70/13.48)	ANFHGRVTIW
  186-  195 (20.08/13.91)	ANLVHDTSCW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.87|      11|      26|     111|     122|       7
---------------------------------------------------------------------------
  111-  122 (17.38/14.64)	CArIPSSTANPP
  138-  148 (20.49/11.60)	CA.VFNVIADSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.82|      45|     309|     718|     766|      10
---------------------------------------------------------------------------
  718-  766 (69.68/48.35)	GSNAQEVRAMVLDMQARLLLDMlgkgIESALINSSALVPEPWQASGETL
 1037- 1081 (80.14/46.54)	GSNNIQVRLHYIDGNYTVLPEV....VEASLGPHMQNMPRPRGADAAGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.19|      15|      39|      10|      28|      11
---------------------------------------------------------------------------
   10-   28 (25.06/21.41)	PEAEPVaqslPQPQDTPKP
   50-   64 (29.13/15.15)	PEEKPV....PMEEDLVNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.29|      27|     193|     126|     163|      13
---------------------------------------------------------------------------
  126-  163 (44.05/23.94)	PIHIVIPE.RPTEcavfnviadspRDSVQFIEWSPTSC..P
  321-  350 (43.24/23.36)	PSTIVVWEvTPGP...........GNGFQIAPKTSTTCavP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33343 with Med16 domain of Kingdom Viridiplantae
Unable to open file!