<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33313

Description Uncharacterized protein
SequenceMCCLVGTQMRQGEANSVRVVKENNKNWLQHANAHENFSSQEKFLSSNFLLSVPPKKPRHQEPNPGTSGFVFQRSENIQVSQRVQFDKAWDVLSSLQNSSRTYIQPGKTVKVTRQIHENTRTTPFHGGYENDNRTCPDVTAAPVVSSHSSRGLDGSVNNHNKYTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTCTPKPSISKLPPITPIADKDDFAREGDNALPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQISKLRHDRSQLNKQIQQLEKYIQSGNLNEERQKSHFSASTAPSTSYVYGTPQQTAPCNGSKRYDAQAYMGDGTFGSSFQSLPSFSIDKYSTLSGPVEREAFIPKIIEVNYIEGSGDKRWSSHDFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWTEQQEILRELTSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAGNLQECGHKCAFYHGSMDPPQRAFVQNQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGAIEQSPLTSGYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHAAGKHLAKGEASRILHHLVVEDILVEEVKKSDFYGSISSILKVNEPKVCNLFAGHRIILRFPSSVKATKPGKSDATPAKGSLTSGKQNVFPIDTPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQISKRVPRTKEELLDINGIGKAKVSKYGDKILETIENTINEYYKLDKGSSGSKGSADSAKRRRDGDPDADADEEALTNSTGRSKKRTIKRQNRKAVIYDSADEDYFHGCHDEDLDFDLIEIDAIDQVTCKNGDGRVLPQWTTS
Length1167
PositionUnknown
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.07
Grand average of hydropathy-0.513
Instability index46.15
Isoelectric point6.77
Molecular weight130896.23
Publications









Function






Annotated function


GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33313
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.94|      36|     252|     408|     446|       2
---------------------------------------------------------------------------
  408-  443 (63.96/36.15)	EVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPT
  661-  696 (67.98/39.13)	ECGHKCAFYHGSMDPPQRAFVQNQWSKDEINIICAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.65|      33|     253|     505|     541|       3
---------------------------------------------------------------------------
  505-  541 (49.31/44.32)	LTSDYCKYKLlyVTPEKV..vkSDNLLR...HLEN.LHFRELL
  766-  806 (47.34/29.19)	LTSGYNRSNM..INPGSIletnTENLMRmvsYCENdVDCRRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.75|      48|     253|      64|     114|       4
---------------------------------------------------------------------------
   64-  114 (76.06/67.07)	PGTSgFVF...QRSENIQVSQRvqFD.KAW..D..VLSSLQNSSRTYIQPGKTVK..VTRQ
  319-  376 (63.69/44.49)	PSTS.YVYgtpQQTAPCNGSKR..YDaQAYmgDgtFGSSFQSLPSFSIDKYSTLSgpVERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.16|      27|     769|     252|     280|       8
---------------------------------------------------------------------------
  252-  280 (38.98/31.19)	LQELKDNLIAISNELLD.NGenLNSTQISK
 1023- 1050 (40.18/25.36)	LQQISKRVPRTKEELLDiNG..IGKAKVSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.83|      17|      17|     909|     925|      10
---------------------------------------------------------------------------
  909-  925 (27.68/16.73)	VEEVKKSDFYGSISSIL
  927-  943 (29.15/18.01)	VNEPKVCNLFAGHRIIL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33313 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SGSKGSADSAKRRRDGDPDADADEEALTNSTGRSKKRTIK
2) YIQPGKTVKVTRQIHENTRTTPFHGGYENDNRTCPDVTAAPVVSSHSSRGLDGSVNNHNKYTGQ
1074
102
1113
165










Molecular Recognition Features






MoRF SequenceStartStop




NANANA