<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33312

Description Uncharacterized protein (Fragment)
SequenceAVSWCGKLNAIACASETCARIPSSTGNPPFWIPIHIMIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLIANFHGRVTIWTQPSQGPANLVLDTSCWLREHEWRQDIAVVTKWLSGVSLYRWFSSKQSAPANSRSTFEEKFLSQQCQTSARWPNFLCVCSVFSSGTLQLHWSQWPPPNATPPKWFCSSKGPLGCGPSGIMAGDAIITESGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVIPRTSTNNSVPPPISSPNWIGFAPLAAYLFSWQDYQLSEEKQGKNQTNQNLGGSIPLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIAEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQAPAGGMNTDIQKVAEFGFDKSKRVYFDPFDLPSDVRTLARIVYSAHGGEIGIAFLRGGVHIFSGPNFAPIDNYQIGVGSAIAAPAFSSTSCCSASVWHDTSKDQTILKIIRVLPPAIPSSQVKTNSSYWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSSETLSSIDPEAVAVEPALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGSGNNRNVVASPTQSSATPATSQGGQNGTTSSSGSTQMQAWVQGAIAKISNTTDGVSNPAPNPPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYVGGVQRTTDTNTQKPQSSASAPGKVEETVKPGSTLARPDDGQAGRVNQLVPAPKGGEEPSPGRSRIGTGNAGQGYTFEEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDLDDLDSTNEAPKLVNLDFSSLKSCDVYDGANGLLPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTALWKTGLEGIWYKCIRCLRQTCAFASPASTNLPSPNDRDIWWISRWAHGCPICGGTWVRVV
Length1151
PositionTail
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.08
Grand average of hydropathy-0.149
Instability index44.77
Isoelectric point6.69
Molecular weight124647.81
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33312
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.51|      39|     764|       4|      81|       1
---------------------------------------------------------------------------
   33-   81 (53.08/13.14)	PIHIMIPERPTECAVfNVIADsprdsVQFIEwspTCCpRALLIANFHGR
  799-  837 (75.43/40.34)	PISINTGTFPGTPAV.RLIGD.....CHFLH...RLC.QLLLFCFFFRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     154.27|      53|     760|     310|     375|       2
---------------------------------------------------------------------------
  315-  350 (43.21/22.89)	..................................................................................................................................................................................................................................................................................................................................................................................................SPEAAAQSAAT.......TTWGSGVTAvaFDPTCGGSVIAVV.I
  351-  375 (12.45/ 9.87)	AEGQYMSPYDPDegpsItgWRVQRW.....................................................................................................................................................................................................................................................................................................................................................................................................................
  737-  778 (33.12/ 7.81)	.........................esslqhvvlhpifgnptssmggqppmqtvwqtkvdlsipptndfknhqapaggmntdiqkvaefgfdkskrvyfdpfdlpsdvrtlarivysahggeigiaflrggvhifsgpnfapidnyqigvgsaiaapafsstsccsasvwhdtskdqtilkiirvlppaipssqvktnssyweraiaerfwwsllvgvdwwdavgctqsaaedgivslnsviavldadfhslpsaqhrqqycpsldrikcrlleganaqevramvldmqarllldmlgkgiesalinpsalvpdpwqvssetlssidpeavavepalvpcvqayvdsvldlashfitrlrryasfcrtlashavtagsgnnrnvvaSPTQSSATPATsqggqngTTSSSGSTQ..MQAWVQGAIAKISnT
 1118- 1151 (65.49/26.61)	ASTNLPSPNDRD....I..WWISRW..............................................................................................................................................................................................................................................................................................................................................................................................AHGC......PICGGTWVRVV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.90|      31|     161|     213|     249|       4
---------------------------------------------------------------------------
  213-  244 (56.08/43.21)	ESGAMHVAGVPIV.NPST........IVVWEV.....MPgPGNGFQ
  376-  420 (42.82/18.26)	ESSLQHVVLHPIFgNPTSsmggqppmQTVWQTkvdlsIP.PTNDFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.94|      18|     419|     182|     199|       6
---------------------------------------------------------------------------
  182-  199 (37.79/25.77)	PNATPPKWFCSSKGPLGC
  603-  620 (34.16/22.32)	PSAQHRQQYCPSLDRIKC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33312 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSGNNRNVVASPTQSSATPATSQGGQNGTTSSSGSTQ
2) VGGVQRTTDTNTQKPQSSASAPGKVEETVKPGSTLARPDDGQAGRVNQLVPAPKGGEEPSPGRSRIGTGNA
727
844
763
914










Molecular Recognition Features






MoRF SequenceStartStop




NANANA