<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33306

Description Uncharacterized protein
SequenceMSNNPQFPGLQPLRPPITGSVDPPRNYAPPMPVQFRPVVPAQQPQQFISMPSQHYQHHQHQPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHMPSESMMPQPDSQAPNGYTPGVGGPGMALSSSYTFAAPTYGQVQTNFNSAGQFQHVPQIHALTGSSSQSITTGTTLQSNGGGQPLITTVIPSATVVQPQLAKNGSTDWIEHTTSTGRKFYYNKKTKVSSWEKPFELMTPIERVDESTNWKEYISPDGRKYFYNKVTKESKWLIPEELKLAREQVEKAIVSGPHSEALLNSHTQPSPTPSVAEATLNADNISSTSQGEPSSPVSVAPVVTTSTSIQQSEMPPGPSTSPSATPITGTKVDELDAPVNTVTPSDTSVGGDKAVVTDISTAITPTNDTNNDPAQDTLGSADGVPAEDKEDGKTDSVGERRNHVAAETKAVEPETLIFANKMEAKDAFKALLESANVGSDWTWDRAMRLIINDKRYGALKTLSERKQAFNEYLNQRKKHEGEEKRMKQKKAREDFKKMLEESTDLASSTRWSKAMSIFENDERFKAVERDRDRRDMFEIFLEELLNKERARVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSCLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMEDHIASGILTAKTHWRDYYTKVKDLPAYVAVASNTSGSTPKDLYEDVAEELEKQYHEEKSRIKDAVKLAKITLLSTWTFEDFKSALSKDIGTFPISDFNLKLVFDELLERVKEKEEKEAKKRKRFADDFFHLLYSIKDITVSSKWEDCIPLLEDSQEFRSIGDESLCREVFEEYIAQLKEEAKESERKRKEERVKKEKDREERERRKGKQRREKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEMDKEKTKKSHSHGSDRKKSKRRASGHESDEGRHKRHKRDHRREGDHGDLEDGEFGDGVDR
Length1019
PositionUnknown
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.06
Grand average of hydropathy-1.058
Instability index57.90
Isoelectric point6.42
Molecular weight115994.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33306
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.68|      16|      17|     878|     893|       1
---------------------------------------------------------------------------
  672-  687 (21.60/ 8.38)	IQKEELRKTERKNRDE
  869-  884 (21.36/ 8.20)	QLKEEAKESERKRKEE
  885-  900 (25.71/11.35)	RVKKEKDREERERRKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.78|      21|      22|      24|      44|       2
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   29-   56 (36.28/16.32)	PPM..PVQFRPVVPA.......Q...QPqqfismpSQHYQ
   57-   81 (31.20/13.04)	HH.....QHQPVGPGgvpmigvG...MP.......PQNQQ
   82-  105 (27.24/10.49)	PQFsqPIQQLP..PR.......P...SP....qlpPPSQA
  106-  123 (22.07/ 7.16)	IPM..PVA.RP............nmhMP.......SESMM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.07|      23|      74|     522|     548|       3
---------------------------------------------------------------------------
  513-  536 (31.63/11.68)	LSERK..QA.F....nEYLNQRKKHEGEEKR
  578-  608 (15.44/ 7.85)	VERDRdrRDmFeifleELLNKERARVQEERK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     192.48|      38|      38|     221|     258|       4
---------------------------------------------------------------------------
  146-  177 (30.51/11.38)	.........SSSYTFaaptYGQVQTNFNS.AGQFQHVPQIHA
  178-  207 (43.28/18.58)	LTGSSSQSITTG............TTLQSNGGGQPLITTVIP
  221-  258 (69.55/33.40)	STDWIEHTTSTGRKF....YYNKKTKVSSWEKPFELMTPIER
  262-  293 (49.14/21.89)	STNWKEYISPDGRKY....FYNKVTKESKWLIPEEL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.40|      22|      24|     338|     361|       5
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  316-  337 (32.13/12.76)	SHTQPSPTPSVAEATLNADNIS
  338-  359 (36.53/16.09)	STSQGEPSSPVSVAPVVTTSTS
  364-  382 (26.74/11.11)	EMPPGPSTSP.SATPITGTK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     154.57|      36|      65|     474|     509|       6
---------------------------------------------------------------------------
  474-  507 (49.22/30.17)	.................................EAKDA....................................FKALL.ES.AN.VGSDWTWDRAMRLIINDKRY
  508-  575 (41.82/24.51)	GAlktlserkqafneylnqrkkhegeekrmkqkKARED....................................FKKMLeES.TD.LASSTRWSKAMSIFENDERF
  576-  642 (22.91/10.05)	KA....................................verdrdrrdmfeifleellnkerarvqeerkrnimeYKKFL.ES.CDfIKASTQWRKVQDRLEADER.
  819-  850 (40.62/23.59)	....................................DD....................................FFHLL.YSiKD.ITVSSKWEDCIPLLEDSQEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      96.65|      16|      17|     975|     990|       7
---------------------------------------------------------------------------
  931-  945 (19.70/ 8.09)	SEIQSSKENKR.SE.DD
  946-  962 (22.84/10.70)	SRKQRKQRHSPeHEMDK
  974-  989 (26.13/13.45)	DRKKSKRRASG.HESDE
  990- 1005 (27.97/14.98)	GRHKRHKRDHR.REGDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.21|      12|      17|     760|     774|       9
---------------------------------------------------------------------------
  760-  774 (18.03/19.97)	LAK.ItllSTWTFEDF
  778-  790 (18.19/10.38)	LSKdI...GTFPISDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.16|      18|      66|     734|     751|      11
---------------------------------------------------------------------------
  702-  720 (17.59/ 6.28)	TAKTHWRDYY...tkvkDLPAY
  721-  738 (24.87/12.06)	VAVASNTSGSTPK....DLYED
  739-  756 (25.69/12.70)	VAEELEKQYHEEK....SRIKD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33306 with Med35 domain of Kingdom Viridiplantae
Unable to open file!