<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33302

Description Uncharacterized protein
SequenceMDIDNIAGEMRVDESTNWKEYISPDGRKYFYNKVTKESKWLIPEELKLAREQVEKAIVSGPHSEALLNSHTQPSPTPSVAEATLNADNISSTSQGEPSSPVSVAPVVTTSTSIQQSEMPPGPSTSPSATPITGTKVDELDAPVNTVTPSDTSVGGDKAVVTDISTAITPTNDTNNDPAQDTLGSADGVPAEDKEDGKTDSVGERRNHVAAETKAVEPETLIFANKMEAKDAFKALLESANVGSDWTWDRAMRLIINDKRYGALKTLSERKQAFNEYLNQRKKHEGEEKRMKQKKAREDFKKMLEESTDLASSTRWSKAMSIFENDERFKAVERDRDRRDMFEIFLEELLNKERARVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSCLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMEDHIASGILTAKTHWRDYYTKVKDLPAYVAVASNTSGSTPKDLYEDVAEELEKQYHEEKSRIKDAVKLAKITLLSTWTFEDFKSALSKDIGTFPISDFNLKLVFDELLERVKEKEEKEAKKRKRFADDFFHLLYSIKDITVSSKWEDCIPLLEDSQEFRSIGDESLCREVFEEYIAQLKEEAKESERKRKEERVKKEKDREERERRKGKQRREKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEMDKEKTKKSHSHGSDRKKSKRRASGHESDEGRHKRHKRDHRREGDHGDLEDGEFGDGVDR
Length772
PositionUnknown
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.06
Grand average of hydropathy-1.193
Instability index50.26
Isoelectric point5.85
Molecular weight89323.28
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33302
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     541.53|      64|      65|     289|     352|       1
---------------------------------------------------------------------------
  227-  284 (67.22/28.37)	.....EAKD..AFKALL.E...SANVGSDW...TW.........DRAMRLII.N.DKRYG.ALKTLSE...RKQAFNEYLNQRK.KHE
  289-  352 (100.33/45.53)	RMKQKKARE..DFKKMLEE...STDLASST...RW.........SKAMSIFE.N.DERFK.AVERDRD...RRDMFEIFLEELL.NKE
  355-  418 (81.86/35.95)	RVQEERKRNimEYKKFLES...CDFIKAST...QW.........RKVQDRLE.A.DERCS.CLEK.ID...RLEIFQDYLRD.L.EKE
  431-  497 (66.70/28.10)	RKTERKNRD..EFRKLMEDhiaSGILTAKT...HW.........RDYYTKVK.D.LPAYV.AVASNTSgstPKDLYEDVAEEL....E
  499-  560 (44.37/16.52)	QYHEEKSR........IKD...AVKLAKITllsTWtfedfksalSKDIGTFPiS.DFNLK.LV............FDELLERVK.EKE
  565-  625 (77.09/33.48)	K.KRKRFAD..DFFHLLYS...IKDITVSS...KW.........EDCIPLLE.D.SQEFR.SIGDESL...CREVFEEYIAQL...KE
  638-  691 (60.85/25.06)	RVKKEKDRE.........E...RERRKGKQ...RR.........EKD....G.G.RERGK.DEAHKKD...KADSDSMELSEIQsSKE
  712-  761 (43.12/15.88)	EMDKEKT......KKSHSH...GSDRKKSK...RR.........ASGHESDE.GrHKRHKrDHRREGD...HGDL.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.08|      18|      19|      64|      82|       2
---------------------------------------------------------------------------
   64-   77 (20.84/11.30)	.....EALLNSHTQPSPTP
  135-  151 (16.94/ 8.09)	KVDElDAPVNTVT.PSDT.
  152-  169 (18.30/14.67)	SVGGdKAVV.TDISTAITP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.51|      17|      19|      91|     108|       3
---------------------------------------------------------------------------
   91-  108 (26.43/23.00)	STSQGE.PSSPvSVAPVVT
  112-  129 (28.07/18.95)	SIQQSEmPPGP.STSPSAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.12|      19|      19|     175|     193|       4
---------------------------------------------------------------------------
  174-  192 (33.46/20.31)	NNDPAQDTLG.SADGVPAED
  193-  212 (27.66/15.56)	KEDGKTDSVGeRRNHVAAET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33302 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKESERKRKEERVKKEKDREERERRKGKQRREKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEMDKEKTKKSHSHGSDRKKSKRRASGHESDEGRHKRHKRDHRREGDHGDLEDGEFGDGVDR
2) EQVEKAIVSGPHSEALLNSHTQPSPTPSVAEATLNADNISSTSQGEPSSPVSVAPVVTTSTSIQQSEMPPGPSTSPSATPITGTKVDELDAPVNTVTPSDTSVGGDKAVVTDISTAITPTNDTNNDPAQDTLGSADGVPAEDKEDGKTDSVGERRNHVAAETKAVEPETL
627
51
772
220










Molecular Recognition Features






MoRF SequenceStartStop




1) DRKKSK
2) EMDKEKT
3) GDLEDGEFG
4) RHKRHKRD
727
712
759
744
732
718
767
751