<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33298

Description Uncharacterized protein
SequenceMSNNPQFPGLQPLRPPITGSVDPPRNYAPPMPVQFRPVVPAQQPQQFISMPSQHYQHHQHQPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHMPSESMMPQPDSQAPNGYTPGVGGPGMALSSSYTFAAPTYGQVQTNFNSAGQFQHVPQIHALTGSSSQSITTGTTLQSNGGGQPLITTVIPSATVVQPQLAKNGSTDWIEHTTSTGRKFYYNKKTKVSSWEKPFELMTPIERVDESTNWKEYISPDGRKYFYNKVTKESKWLIPEELKLAREQVEKAIVSGPHSEALLNSHTQPSPTPSVAEATLNADNISSTSQGEPSSPVSVAPVVTTSTSIQQSEMPPGPSTSPSATPITGTKVDELDAPVNTVTPSDTSVGGDKAVVTDISTAITPTNDTNNDPAQDTLGSADGVPAEDKEDGKTDSVGERRNHVAAETKAVEPETLIFANKMEAKDAFKALLESANVGSDWTWDRAMRLIINDKRYGALKTLSERKQAFNEYLNQRKKHEGEEKRMKQKKAREDFKKMLEESTDLASSTRWSKAMSIFENDERFKAVERDRDRRDMFEIFLEELLNKERARVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSCLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMEDHIASGILTAKTHWRDYYTKVKDLPAYVAVASNTSGSTPKDLYEDVAEELEKQYHEEKSRIKDAVKLAKITLLSTWTFEDFKSALSKDIGTFPISDFNLKLVFDELLERVKEKEEKEAKKRKRFADDFFHLLYSIKDITVSSKWEDCIPLLEDSQEFRSIGDESLCREVFEEYIAQLKEEAKESERKRKEERVKKEKDREERERRKGKQRREKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEMDKEKTKKSHSHGSDRKKSKRRASGHESDEGRHKRHKRDHRREGDHGDLEDGEFGDGVDRW
Length1020
PositionUnknown
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.06
Grand average of hydropathy-1.058
Instability index58.41
Isoelectric point6.42
Molecular weight116180.35
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33298
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      86.00|      16|      17|     878|     893|       1
---------------------------------------------------------------------------
  672-  687 (21.60/ 9.91)	IQKEELRKTE...RKNRDE
  869-  884 (21.36/ 9.71)	QLKEEAKESE...RKRKEE
  885-  900 (25.71/13.36)	RVKKEKDREE...RERRKG
  934-  952 (17.33/ 6.31)	QSSKENKRSEddsRKQRKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     192.48|      38|      38|     221|     258|       2
---------------------------------------------------------------------------
  146-  177 (30.51/14.07)	.........SSSYTFaaptYGQVQTNFNS.AGQFQHVPQIHA
  178-  207 (43.28/22.87)	LTGSSSQSITTG............TTLQSNGGGQPLITTVIP
  221-  258 (69.55/40.96)	STDWIEHTTSTGRKF....YYNKKTKVSSWEKPFELMTPIER
  262-  293 (49.14/26.90)	STNWKEYISPDGRKY....FYNKVTKESKWLIPEEL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     408.27|      66|      66|     460|     525|       3
---------------------------------------------------------------------------
  404-  457 (52.10/26.82)	KA.VvtDI...STAITptndTNNDPAQDT....L.GS.ADgVPAE............DKEDGKT..DSVGERR...N....HVAA
  460-  525 (104.36/60.81)	KA.V..EP...ETLIF....ANKMEAKDAFKALL.ES.AN.VGSDWTWDRAMRLIINDKRYGAL..KTLSERKQAFN....EYLN
  528-  597 (93.82/53.96)	KK.H..EG...EEKRM....KQK.KAREDFKKMLeES.TD.LASSTRWSKAMSIFENDERFKAV..ERDRDRRDMFEifleELLN
  600-  659 (79.53/44.66)	RArV..QE...ERK......RNIME....YKKFL.ES.CDfIKASTQWRKVQDRLEADERCSCL..EKI.DRLEIFQ....DYL.
  802-  868 (78.46/43.97)	R..V..KEkeeKEAK.....KRKRFA.DDFFHLL.YSiKD.ITVSSKWEDCIPLLEDSQEFRSIgdESL..CREVFE....EYIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     190.12|      39|      41|      42|      82|       4
---------------------------------------------------------------------------
    2-   29 (47.82/21.29)	..........SNNP..QFPGLQPLR..P....P.ITGSVDPPRNYA.P
   42-   82 (76.27/44.45)	QQPQqfISMPSQHY..QHHQHQPVG..PG.GVP.MIGVGMPPQNQQ.P
   86-  107 (39.62/16.80)	Q........PIQQL........PPR..PS...P.....QLPPPSQAiP
  111-  143 (26.41/ 8.79)	ARPN..MHMPSESMmpQPDSQAPNGytPGvGGPgM.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.53|      15|      15|     976|     990|       5
---------------------------------------------------------------------------
  976-  990 (25.09/13.67)	KKSKRRASGHESDEG
  992- 1006 (27.44/15.72)	HKRHKRDHRREGDHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.99|      14|      15|     768|     781|       6
---------------------------------------------------------------------------
  768-  781 (24.93/15.68)	TWTFEDFKSALSKD
  784-  797 (23.06/13.94)	TFPISDFNLKLVFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.64|      26|      46|     305|     330|       7
---------------------------------------------------------------------------
  305-  330 (46.26/24.71)	VSGPHSEA........L...LNSHTQPSPTPSVAEAT
  344-  377 (36.52/18.00)	PSSPVSVApvvttstsI...QQSEMPPGPSTSPSATP
  378-  400 (19.86/ 6.52)	ITGTKVDE........LdapVNTVT.PSDT.SV....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33298 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKESERKRKEERVKKEKDREERERRKGKQRREKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEMDKEKTKKSHSHGSDRKKSKRRASGHESDEGRHKRHKRDHRREGDHGDLEDGEFGDGVDRW
2) IVSGPHSEALLNSHTQPSPTPSVAEATLNADNISSTSQGEPSSPVSVAPVVTTSTSIQQSEMPPGPSTSPSATPITGTKVDELDAPVNTVTPSDTSVGGDKAVVTDISTAITPTNDTNNDPAQDTLGSADGVPAEDKEDGKTDSVGERRNHVAAETKAVEPETL
3) MSNNPQFPGLQPLRPPITGSVDPPRNYAPPMPVQFRPVVPAQQPQQFISMPSQHYQHHQHQPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHMPSESMMPQPDSQAPNGYTPGVGGPGMALSS
4) NFNSAGQFQHVPQIHALTGSSSQSITTGTTLQSNGGGQPLITTV
874
304
1
162
1020
467
147
205










Molecular Recognition Features






MoRF SequenceStartStop




1) EMDKEKT
2) RHKRHK
3) RKKSK
959
991
975
965
996
979