<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33284

Description Uncharacterized protein (Fragment)
SequenceLQAMKESYLPDMNEMYQKIANKLQQHDSLLQPSKSDQIDKLRAYKMMLERMMALVQIPKSNILPHFKEKLGSYEKQIINLITNRPRKGMSSVQVGQIPQNHMSSMQQPQSQVTQLQSHENQMNSQLQSTNLQGSVSTMQQNNVASSQHNPLSGVSAGQQSMMNSMQPGTNLDSGQGNSMNSLQHVPMNSIQQTTVSTPQQQTNINSLQSQGGANVSQPNSLQSGSSALQHQLKHQQEQQMLQNQQFKQYQHRQMMQRQLLQQQQLHHPAKPQLSAQLQTHQMSQLHQMNDINDIKMRQGMGVKPGVFQQHLTSGQHSAYSHQQLKQGNAFPVSSPQHLPAASPQIQQHSSPKVEQQNHLPSKTKVATPLQSSNSPFVGPTPSPPLAPSPMPGESEKPVPCVSSISNGANIGHQQTGGAVAPAQSLAIGTPGISASPLLAEFSGPDGGHGNALAATSGKSTVTEQPLERLINV
Length472
PositionTail
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.03
Grand average of hydropathy-0.755
Instability index66.07
Isoelectric point9.54
Molecular weight51542.37
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33284
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     462.45|      87|      89|     191|     278|       2
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   21-   89 (95.59/27.42)	NKLQQH.DSLLQPS.KSDQIDKL...RAY..KMMLERMMALVQIPK......SNILP.H.FKEKL...................................GSYEKQIINLITNRPR...................KGM.....
   90-  176 (76.43/20.49)	SSVQVG.....................QI..PQ.NHMSSMQQPQSQ......VTQLQsH..ENQMNSQLQ....................stnLQ...GSVST.MQQNNVASSQHNplsgvsagqqsmmnsmqpgTNLDSGQG
  177-  218 (60.92/14.89)	NSMNS.....LQH.......VPM...................................................................nsiQQ...TTVSTPQQQTNINSLQSQ...................GGANVSQP
  219-  304 (137.96/44.86)	NSLQSG.SSALQHQlKHQQEQQMLQNQQF..KQYQHRQMMQRQLLQ......QQQLH.HPAKPQLSAQLQ.....................thQ......MSQLHQMNDINDIKMR...................QGMGV.KP
  309-  422 (91.55/25.96)	QHLTSGqHSAYSH.......QQLKQGNAFpvSSPQHLPAASPQIQQhsspkvEQQNH.LPSKTKVATPLQssnspfvgptpspplapspmpgeSEkpvPCVSSISNGANIGH.QQT...................GGA.VAPA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33284 with Med15 domain of Kingdom Viridiplantae
Unable to open file!