<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33282

Description Uncharacterized protein (Fragment)
SequenceMFTSCKLTLRAMTYLGDVLLLRDASLGRCAMIHLGGDTSRRLFILQNAASTYGDYVDFGPPTFLLSTSSHPMTWSVQILNRGLVLQPQIHNLGQQHSIPLPGQMQTHQQLLSQNVQNNVASQPNLPPVSSLAQTTSQNIVQNSNIQNLPGPNSVGSTISQNSNLQSMFPGSQRSMPGRQQVVPPQQQLQSQNPQQFLYHQQFLKQKLQLQSQMQQQQQQSLMQPNQLQSSQQSTNIQQSMQSMPQQHSQVMRHQQQQTSIVHQQQTPGTQQTILPTQQQQLMGPQSNTTNMQHAQMLGQQNNVGDVQQPQRMLSQQSNLTSMQQRQQQLINQQNNPANVHQQQLGNNGPGLQQQHLLGPDSGNADMHTSHHSAHMLQHPKVPMQQQSQQNTSNLLLPHSQQSQPLGSQQQLMPQIHTQSTQLQQQLGLQQQQQPNPSLRDMQQRIQASGSLLQQQNVLDQQKQLYQSQRNLPETSATSLDSTTQSAQPSGNDWQEEVYQK
Length500
PositionTail
OrganismPhaseolus vulgaris (Kidney bean) (French bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Phaseolus.
Aromaticity0.03
Grand average of hydropathy-0.908
Instability index77.98
Isoelectric point9.42
Molecular weight56178.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33282
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     526.77|      74|      74|     315|     388|       1
---------------------------------------------------------------------------
   86-  145 (67.00/10.34)	QP......QIHNLG...........QQHSI.PLPGQ............MQTHQQLLSQNVQN.nvaSQPN.L..ppvSSL.AQTTS......QNIVQNS....N..I.
  146-  199 (60.17/ 8.34)	...........QNLP...............GPNSVGSTI..S.QNSN..LQ....SMFPGSQ...............RSM.PGRQQvvppqqQL..QSQN.PQQflYH
  200-  262 (76.81/13.21)	QQflkqklQLQSQMQQ.......QQQQSLMQPNQ....LQSS................QQST..niQQS..M.....QSMpQQHSQ......VMRHQQQQ.TSI..VH
  263-  340 (111.32/23.32)	QQ......Q....TPGtqqtilpTQQQQLMGPQSNTTNMQ....HAQMLGQQNNVGDVQQPQrmlsQQSN.L.....TSM.QQRQQ......QLINQQNN.PAN..VH
  341-  416 (124.70/27.25)	QQ......QLGNNGPG.......LQQQHLLGPDSGNADMHTS.HHSAHMLQHPKVPMQQQSQ...qNTSNlL.....LPH.SQQSQ......PLGSQQQL.MPQ..IH
  423-  498 (86.76/16.13)	QQ......QL.....G.......LQQQQ..QPNPSLRDMQQRiQASGSLLQQQNV.LDQQKQ.lyqSQRN.LpetsaTSL.DSTTQ......SAQPSGNDwQEE..VY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.09|      20|      21|      19|      38|       3
---------------------------------------------------------------------------
   19-   38 (34.16/24.11)	LLLRDASLGRCAMIHLGGDT
   43-   62 (35.92/25.69)	FILQNAASTYGDYVDFGPPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33282 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MQQQQQQSLMQPNQLQSSQQSTNIQQSMQSMPQQHSQVMRHQQQQTSIVHQQQTPGTQQTILPTQQQQLMGPQSNTTNMQHAQMLGQQNNVGDVQQPQRMLSQQSNLTSMQQRQQQLINQQNNPANVHQQQLGNNGPGLQQQHLLGPDSGNADMHTSHHSAHMLQHPKVPMQQQSQQNTSNLLLPHSQQSQPLGSQQQLMPQIHTQSTQLQQQLGLQQQQQPNPSLRDMQQRIQASGSLLQQQNVLDQQKQLYQSQRNLPETSATSLDSTTQSAQPSGNDWQEEVYQK
2) SQPNLPPVSSLAQTTSQNIVQNSNIQNLPGPNSVGSTISQNSNLQSMFPGSQRSMPGRQQVVPPQQQLQSQNPQQ
213
121
500
195










Molecular Recognition Features






MoRF SequenceStartStop




1) DWQEEVYQK
492
500