<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33266
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MENPAAAGDAMRVAIDYWCQFVARCVSERLETDKFEAYVKIVHDQHPLPPTLVADFFLRPHPSDDSSLDPRIPPYLQVLTKLGYVDTPSILRALYKYSSSHAHAQTQKDHLQSNTEEGKGKEKEKATSDDKEKAEGKEDAQPKKNITRWRSSYWAEEVLFYRLTKSVVEGRAIQDSRTALEVAMIISKFMELFTTALPATAFAADMLEQQFPNGQLRDEMESSRAALVALLLRLCENNILVSAISKPLAKDVRKALSTSLASFLPALQLIPEIADKLELFRTEILASSDPADKKKQVANAAMDELLDSTVGLENFVVAPISVSNTRAGLYIYLNAALIGRPILDDHALFSYMSNKYGADIQSSAIDLVLASFDILANAVFRNEGQKDAHLLRSFLINKLPLLLYQLLPPGFSGTSAEFCITEALTHVDTSLFPTASLMFDESRNNNPYTESIREEFCAACVLHGLVQREHVERILGEISLSYEPSLQKHSKDKLVQDCLSDTDKIQGLVRELDKTDGNVGAVCQALVEVLRQSCHNKETMSLKLLCSQLAAKPQSLDVILLFEKLPNILEPLCQLLDNWRYEEDQGEYQPVYEEFGAVLLLVFAFTYRYNLNAVDIGITTPDSWVAKIIGRGHVGRQGDELTQRENDHINGWVHGLFDTEAGGLGDELMSSCPPQEFYLVVAPLFQSIVVAYTYGYLNDESLKGGIEYLVDTFLLPSLVPAIRFLADYLWIDQKEQKSIIKILQLILLPSSISGEASTMLSSVKNLIAKPLEHALRTYQRRDPKNQDIEPLLRTLKESIPLSRRTGGTDLNELESWTATPPSGLSSAVKLTIQGLVHWSIHPAMNSMPTSYTHRQILAGLKLLGPKRLLHVILEELRQHTAAGSANIIYDVATSLVCAPDAVKDAPVTDANGNMLPPIQRQRTLRDLLKVEVESCRRLQKEDPVLAEHVVRLHRRVEAQMVIPQPQGMLQPADMSLNLADDTAALGDAMAAAASGVQGDNMSVDNLALDVSMGGVPSDMGLGSATDGGSLDPSGDAAMFEGFDTQDMENFDWDMNSFS |
Length | 1058 |
Position | Tail |
Organism | Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.153 |
Instability index | 43.41 |
Isoelectric point | 5.03 |
Molecular weight | 117131.21 |
Publications | PubMed=17823352
PubMed=20237561
PubMed=26198851
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP33266
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 118.09| 38| 47| 489| 526| 1
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489- 526 (63.52/50.68) HSKDKLVQD..CLSDTDKIQGL..VRELDKTDGNVGAVCQAL
535- 576 (54.58/42.31) HNKETMSLKllCSQLAAKPQSLdvILLFEKLPNILEPLCQLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 36.71| 10| 27| 678| 687| 2
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678- 687 (18.25/ 9.69) YLVVAPLFQS
708- 717 (18.46/ 9.88) YLVDTFLLPS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 145.70| 48| 134| 219| 271| 6
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219- 271 (71.67/57.67) EMESSRAALValllrLCENNILVSAISKPLAKDVRKALSTSLASFLPAL..QLIP
359- 408 (74.02/48.83) DIQSSAIDLV.....LASFDILANAVFRNEGQKDAHLLRSFLINKLPLLlyQLLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 67.80| 20| 25| 985| 1004| 7
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985- 1004 (33.20/16.94) LGDAMAAAASGVQGDNMSVD
1012- 1031 (34.60/17.93) MGGVPSDMGLGSATDGGSLD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 41.37| 11| 23| 810| 820| 14
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810- 820 (19.67/12.24) LNELESWTATP
832- 842 (21.70/14.27) IQGLVHWSIHP
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