<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33258
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPMIMEEGIDVDDLFGDPTSLELGLPSTAVTKGLAQRLDEMRLVGCCQKIAWSRLGCIAYISQDGLKVNVRHIYCRPTDGKWTLSEDTPLAAVTEAHGGHLLVHLSWNETGSELAVVDSSGRVSIYTISIALNSISGQRQAVLDADDDGGQIVGMMWLNLQRSIHAFHQAAKLNGRWGYSPFRRRPIGPFHPVNKSALVCITRSAQMRLLYQNPDSRWAESSTELKHTAHSDGLLTHAALVPTQAGIILATHSACQKISVYRVNITWNPPQWDPNQPKQASAATPFPTPTLRFLHSKIETSSGVFAKNRSGLDHADDLSQSTNSLYCLTRLDLVPGPSENTAGSASGPWIIAVYSSPVHVSEDHHQQQHQQQQNHGASSIIVRWQLETAAQSLHPKFDEVISKKSNAQAKPRIELRRLEDVYSDRHIVSVDHTEYGNVLAVTYDDSSIAFYDPKTMTNFNGVDDTNTVISMAQSGFHFALDAPGVHISFSPNACLAVVLDGEWQMHLRTMEHSFGSEDGLYDDSKFSAAVAALALAFCRGCGSDTNTDDIVMMLLRQLTPDAQTVFVSEVYRALPINCNFTVEHDKLMQHPYIPRCLSVQAALGFKEYAKPRTLAAAVPWSILHLRHASVLFAYFFQYNKGAREAEPHDPDVLRMVLGNTKWALDFANYVLDELFDLQDEFESVFSDQEAFAQKVKSTNSLSLLVLLCSMSRAFLRFICRGLRGVYAGFAAAHSLSGEARVVYAEICKVISASPVRIDVYEKFLAGVDSAVRHAYQGAGFGDAERPAPEKELLANARIPAVLVPAVATLLRQTLPSLKPEIDRMGLYLADYSWLGIGSDRKTELYRRSRQVDILKKMPLRTPPTDTDQNGAGNRVKSAVPRRHCTRCGEVSGDVTPPRSFLWFRLVAKLGILRSCLCGGMWTLEPESASVPILAHQQTSARTPAATTAVLPGSA |
Length | 954 |
Position | Tail |
Organism | Byssochlamys spectabilis (strain No. 5 / NBRC 109023) (Paecilomyces variotii) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Thermoascaceae> Byssochlamys.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.164 |
Instability index | 41.68 |
Isoelectric point | 6.51 |
Molecular weight | 105102.23 |
Publications | PubMed=24407650
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP33258
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 217.63| 71| 77| 436| 512| 3
---------------------------------------------------------------------------
436- 512 (112.41/112.30) GNVLAVtYDDSSIAFYDPKTMTNF.NGV.DDTNT..VISMAQSgfHFALDAPGVHISfspNACLAVVLDGEWQM.HLRTMEH
515- 590 (105.23/82.32) GSEDGL.YDDSKFSAAVAALALAFcRGCgSDTNTddIVMMLLR..QLTPDAQTVFVS...EVYRALPINCNFTVeHDKLMQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.92| 20| 423| 291| 326| 5
---------------------------------------------------------------------------
303- 326 (30.49/43.65) GVFAknrsGLDHADDLSQSTNSLY
724- 743 (35.44/14.31) GVYA....GFAAAHSLSGEARVVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 166.86| 48| 92| 235| 282| 7
---------------------------------------------------------------------------
235- 282 (85.98/51.20) LTHAALVPTQAGIILATHSACQKISVYR..VNITWNPPQWDPNQPKQASA
328- 377 (80.88/47.75) LTRLDLVPGPSENTAGSASGPWIIAVYSspVHVSEDHHQQQHQQQQNHGA
---------------------------------------------------------------------------
|