<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33257
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSEGEAQQLIQKLLLQVLSRRLPQSKWLSLLHQLVRRIDASRQDAGGDDEDGMSLAGSQAAGCLVKQILSQSSIDPLLTEYLQALIYGSANRSGVEPDQGPVTDVITVTLHLLANVQIAAANVPAIETISSVTGQGLLMTFQGPAPFRISSPAFLHLLQSLFAGPSNAVAQLASSEALSKDGTIAPAALAFVVSNLRLLALAADPTIASPQNLLAPRVAITVLINVAQGLLAYTIQKLSVAQTSKDYKLKPHDDALRHTRSMSRSCVTEIEAVLQSMNPAWKDEIALLRSLTSQIGVVEQVSEALSEAATTSRTSTQARKRKAETWQDAQQRATWDHFLNVSSIAATEKPPVEPEMALLMHVLVDQHVAWERKLDAVKTLFLARRNAAAPSLTLEKSLTAYYFELLVAAIDACASIVEMPPAFKGAEVYAAIWRNALCGMVPEIVLQLEQWLDVQQDLPLRGQRLEAPHVRLEAALRAALLVMADRLNTCESATGQSHAQSSGAEEAAAMTDVLGLDTPPSQPIKAWLLRASIEHALARPEAIADEFPDGHKLASEVQSLTQSLRMDAQLEGLALSTLFETRVPSDDPHELLHRVASDPGTHFSFARQLVFQMQSWLEQHDLESIARWCKALSEDACEGGAVLDTVMLYIDPLEMLEPLASVLDHPELGQTSDEPSTLSNILLFAQLLCYRYAIHPSRISRYIPPNNDLDESQTSQDTAPPFLATHLATTSFCSPLATLSEDERALVGRWIHALFGNEGISDDLISLSPPTTLLRLSPLLFSQSISACQHGVIDLETLRGGLSYFLQDLLSFALPSALVWLLGEIVRTPQQPVLDFLAECGLQSTVVDVPSVDGALANGLKRNATSRTVGLEVLALLLDTEACPGVVREVIARDFHTFVQAVEGDAGLANGCETFELGALRARMEGKGVTAGLLSGAGRTWVRGKASGVGPLLATSGSSNVDRAVRTMGKTDAAEQKALAGWLCLVAPALKSVDTPLPAVLSFIQRLDFAKADEGAIESLVRVLGLVLGLIRAGEAQRSTPNNVASDLLAPSANEKAAEVVAAGGEGADLFDDEPTTPPLPSTGVPLNGATQAGTATAASTAATSISAALLIASPDFSITSRQLLDLIVLKLVRFKSAVQKGARGCTRAKWEVLESALMDHLSELSPVDEADGVAESRHSGLSAWLALLQ |
Length | 1190 |
Position | Tail |
Organism | Kalmanozyma brasiliensis (strain GHG001) (Yeast) (Pseudozyma brasiliensis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina>
Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Kalmanozyma.
|
Aromaticity | 0.05 |
Grand average of hydropathy | 0.093 |
Instability index | 47.70 |
Isoelectric point | 5.00 |
Molecular weight | 127274.76 |
Publications | PubMed=24356824
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP33257
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.97| 17| 19| 918| 934| 1
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918- 934 (29.79/15.39) GALRARMEGKGVTAG.LL
936- 953 (27.18/13.49) GAGRTWVRGKASGVGpLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.90| 15| 19| 129| 144| 2
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129- 143 (27.21/10.79) ISSVTGQGLLMT.FQG
149- 164 (20.68/ 7.21) ISSPAFLHLLQSlFAG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 137.77| 43| 209| 535| 617| 3
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550- 597 (60.09/84.56) GHKLASeVQSLTQSLRMDAqLEGLAlstLFETRVPSDDPHELLHRVAS
619- 661 (77.68/26.66) QHDLES.IARWCKALSEDA.CEGGA...VLDTVMLYIDPLEMLEPLAS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 313.43| 74| 75| 378| 452| 4
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318- 374 (88.89/48.73) .....ARKRKAETWQDAQQRATWDHF.LNVSS..IAA....TEKPPV.....EPEMALLMHVL...VDQHV.AWERKL
378- 452 (120.58/73.55) KTLFLARRNAAAPSLTLEKSLTAYYFELLVAA..IDACASIVEMPPA.FKGAEVYAAIWRNALcGMVPEIVLQLEQWL
456- 528 (103.96/58.26) QDLPLRGQRLEAPHVRLEAALRA...ALLVMAdrLNTCESATGQSHAqSSGAE.EAAAMTDVL.GLDTPPSQPIKAWL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.08| 13| 19| 14| 26| 5
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14- 26 (21.94/12.38) LLQVLSRRLPQSK
30- 42 (22.14/12.55) LLHQLVRRIDASR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.36| 16| 20| 997| 1014| 7
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997- 1014 (21.88/20.22) LPAVLSFIqrLDFAKADE
1020- 1035 (25.48/15.67) LVRVLGLV..LGLIRAGE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 128.37| 40| 869| 244| 306| 10
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264- 306 (59.42/71.29) RSCVTEIEAVLQSmnpAWKDEIALLRSLTSQIGVVEQVSEALS
1144- 1183 (68.95/33.41) RGCTRAKWEVLES...ALMDHLSELSPVDEADGVAESRHSGLS
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