<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33247

Description Uncharacterized protein
SequenceMHELLLFASIPAHQHHDLLQQLTGLTAMQPRYRLERRLLFKAYRKPGYVNTRIGGSQDLQSSDMQRLTKMLNGGMYYTQVVGPVHERDFGSNPPPLMGPGVDEKQTADQEYEFDEQPWRLEFRDIPEAGTRSAVTSRVMSNATLPRGDVILPMSAWGYSFVTEYVLEGHVFVYNDIVIFMHRVLNFPDDGQDPRSPRRRLPPLKDMTPLDKSGGYVLQAAITVQDGANPETMKMASQHLFGLREQLKSVVRLEQADRTCDFVKLACAFLASSHSRRWKLTTSSSQLGTAIETPSVGTNEIFLGQFTILTLQAFRMAGAGGMKRAASPARASISPPPVKRKIESTTTSKSVASFFTPASQKKPEKITWRILNNSLIIGRYSTDSADKRPTEPGTRRKIAAFDFDSTLIATASGNRFARDAEDWKWWHPTVPTRIKELNSEGFQVVVVSNQKKISLQKEIKGGRSESKSLTTFKEKASAVMRQLDVPLSLYAAAQYDEYRKPRMGMWKELVEDYDLDVDNSLDLQSSFFVGDAAGRPGDHSCSDRDFAANIGITFKTPEEFFLGKPPEPVSRAFDPGVYIKEESSGPEPVTFEKRNSLDLVIFCGSPGAGKSTFYWKYLQPHGYERINQDTLKSRQKCIKVAKEHLAAGRSVAVDNTNADPETRACWTEIAREHKIPIRVVYFTSPPELCRHNDAVRAANRDLNPESRTLLPGIAFGDFTRRFRPPELSEGFQDITRVDFRFEGDEEAKKIWRQYWI
Length755
PositionHead
OrganismByssochlamys spectabilis (strain No. 5 / NBRC 109023) (Paecilomyces variotii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Thermoascaceae> Byssochlamys.
Aromaticity0.10
Grand average of hydropathy-0.525
Instability index49.97
Isoelectric point8.91
Molecular weight85248.67
Publications
PubMed=24407650

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33247
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.31|      19|      37|     681|     699|       1
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  681-  699 (36.79/23.29)	FT...SPPELCR.HNDAVRAANR
  717-  739 (26.51/14.77)	FTrrfRPPELSEgFQDITRVDFR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.17|      12|      34|     526|     537|       4
---------------------------------------------------------------------------
  526-  537 (23.47/13.77)	FFVG...DAAGRPGD
  559-  573 (17.70/ 8.52)	FFLGkppEPVSRAFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.92|      26|      36|     378|     403|       6
---------------------------------------------------------------------------
  378-  403 (45.62/29.13)	RYSTDSADKR...PTEPGTRRKIAAFDFD
  414-  442 (41.31/25.65)	RFARDAEDWKwwhPTVPTRIKELNSEGFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.09|      17|     184|     447|     463|       7
---------------------------------------------------------------------------
  447-  463 (29.76/21.09)	SNQKKISLQKE.IKGGRS
  632-  649 (25.33/16.91)	SRQKCIKVAKEhLAAGRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.62|      50|     129|     154|     204|       8
---------------------------------------------------------------------------
  154-  204 (87.65/58.13)	SAWGYSFVTEYVLEGHVFVyNDIVIFMHRVLNFPDDGQDPR..SPRR...RLPPLK
  284-  338 (76.97/45.89)	SQLGTAIETPSVGTNEIFL.GQFTILTLQAFRMAGAGGMKRaaSPARasiSPPPVK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33247 with Med18 domain of Kingdom Fungi
Unable to open file!