<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33234

Description Uncharacterized protein
SequenceMWQVWMSDFPGTVFVIVEDTGRSSRAKVWRDWELATKKWKKQKRQEIEARRKRDAQKPSEQHLSSGRTDDGSANTEGTKPEGNPTSTTQADTAAKDENQSEPMDVDAAASITDADAAGAKVEADVSGPSVAPTSEQATIATSLSTEQSTDTTMVDSIDDDPIETAGPKPALRLPSHTRYTVSALTSSMSAMLTSLNLPPPHGAPVGTAGPGAWVPRGAAVSIEGLILEINSSSLNALPGISPALTSVSTADDAVSSSGVDWRVRVGSVMGGGGRSAGAIVEAEFLPISTLLPTSKFMHDFLYSLFPPGLVPMPAPVAGMNAQGAAATSLNGSVTGTPRMGNATLGAANNTAASTTANASSASYTIGGGTTGATPPNRNFNIPVVSDQLWEEVVPRSGEGWRRRIAKRSHQMKVAARVQRRQRKNATTSTQSVNKTRVVAPETNGDDAFGWHTFGSDEEPDAEAHANGDWQDDNDLSSSESETDQVLVTDSIAAAGGLTGTAVTMQQVDEEDDDDDDDRPLGAPAWSNANTRTSSASNLNSASVSVAAAAKKEDTVQLIFQGLRADEKDADDGAGADGWSGIERGRRIAFQYVQMLRAEGII
Length601
PositionHead
OrganismKalmanozyma brasiliensis (strain GHG001) (Yeast) (Pseudozyma brasiliensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Kalmanozyma.
Aromaticity0.05
Grand average of hydropathy-0.480
Instability index44.34
Isoelectric point4.72
Molecular weight63096.50
Publications
PubMed=24356824

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33234
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     404.65|      88|      94|     195|     287|       1
---------------------------------------------------------------------------
   80-  144 (79.34/32.53)	..PEGNP....TSTTQADTAAKDENQSEPMDVDAAASiTDADAAGAKVEAD...........................vSGPS.....V...APTSEQATI.....ATSLS
  145-  235 (113.23/52.45)	TEQSTDTTM..VD.SIDDDPIETAGPKPALRLPS....HTRYTVSAL....tssmsamltsLnL.PPP...HGAPVGT.AGPGAW...VPRGAAVSIEGLILE.INSSSLN
  236-  330 (122.71/58.84)	ALPGISPAL..TSVSTADDAVSSSGVDWRVRVGSVMG.GGGRSAGAIVEAE....flpistL.L.PTSkfmHDFLYSL.FPPG.L...VPMPAPVA..GMNAQgAAATSLN
  332-  408 (89.36/37.49)	SVTG.TPRMgnATLGAANNTAASTTAN..ASSASYTI.GGGTTGA...................tPPN...RNFNIPV.VSDQLWeevVPR....SGEGWRRR.IAKRS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.77|      50|      53|     473|     525|       2
---------------------------------------------------------------------------
  473-  525 (75.96/53.42)	NDLSSSESETDQVLVtdSIAAAGGLTGTAVTMQQVDEEDDDDDDDrPLGAPAW
  529-  578 (81.81/47.61)	NTRTSSASNLNSASV..SVAAAAKKEDTVQLIFQGLRADEKDADD.GAGADGW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33234 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEVVPRSGEGWRRRIAKRSHQMKVAARVQRRQRKNATTSTQSVNKTRVVAPETNGDDAFGWHTFGSDEEPDAEAHANGDWQDDNDLSSSESETDQVLVTDSIA
2) GAAATSLNGSVTGTPRMGNATLGAANNTAAS
3) LTGTAVTMQQVDEEDDDDDDDRPLGAPAWSNANTRTSSASNLNSASVSVA
4) TANASSASYTIGGGTTGATPPNRNFNIPVVSDQL
5) WKKQKRQEIEARRKRDAQKPSEQHLSSGRTDDGSANTEGTKPEGNPTSTTQADTAAKDENQSEPMDVDAAASITDADAAGAKVEADVSGPSVAPTSEQATIATSLSTEQSTDTTMVDSIDDDPIETAGPKPALRLPSHTRY
390
323
497
355
39
492
353
546
388
179










Molecular Recognition Features






MoRF SequenceStartStop




1) GWRRRIAKRS
2) VWRDWELATKKWKKQKRQEIEA
399
28
408
49