<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33233

Description Uncharacterized protein
SequenceMKEEYDEAVSQQQEGAGDNAAAGPSNSNQISTSFFPPPPQVYKKFTKRNLRYLEILNSHPLADDETPWEELNAAERLKRQTAILRQHGFLLLGRSNDKQEGEDVEMDAVEGHDAGANAADLPDFDLKADLEPPNVDWIEEDGGYTVFGQLWPIPDVTPTLEQLGIPVLYPLEGTNRKELLLTLLQTLLQTYREITADLLKPAQPYDVWVPAVPDPNLTPEQQQQQMATNPGFWTQSTEAKDRLKHMQNVVVNMQFLINELRPVQARETLKLIMQMQLERRKQETQLIRDAGGATPQIALSPVERSAFAHLFNLADPERTGIVTGDAAVAFFAKSKLPPAVLGQIWAMADSANNGFLTPPSFSIALRLISHAQRGETITDASTKRPGPPPTMEGVNLPLTAQLTGGQSGSAVPTNMPGVIEIKTEDRARYTRIFANSGPVGGIIDGDRAKEIFVKSKLPFDKLGAIWNLADTQARGALDLTDFIIAMHFIQNTMNGTLNSIPAALPPGLYEQAKGSGGAGSRVLPGSPLAAQNTGGSASGFGSSGIPRQMTGSSFPQPAFQPPQQSAPAATAPWDVKPDEKARADQFFDGLDVSKQGKLDGAAVVPFFMQSKLTEPVLAHVWDLSDITQSGTLSKEEFAVAMHLINDQLAGKPLPQALPPSLVPPSMRSLDLPAAVNPQQSDTQKDLFSLMDDDPPAPAISASSAFIAPSAAAPVVTGAQSTPFGSTAAAQRSAPGPFDDDFFGGGGSSSTPTAAQPQPVARALSPAATGGSFGSASAFRSPGLASPGIASPSASTSRLGTFAAAAPAAAAGVGAGAALGGAGGNDQSAEFGNKSIQLQSTEKAVSDLQSQRGTLESSIATNASSLAELETRLSTVRGQHESETKLVKDLEDRQQKQSAELKTLREDVIREESELSALKAEKDELEQALMRDREDVRDMKKRMNDVQTETKSLKEQLEKLRKDARQQKGLVAISKKQLATAEGDQDKTASEIEAVQRGELGDEEVGAAGLAPTSRGTAADSVVSPAASTRSYNPFDRFGAGAGSQPATPTTGQHPSVGTSLAAGAGAGAVLGGVVAAATHHDDGSHETQQDTREADPFGVPDTEPQQGVSSLGFDDAFAIPAESTATSASAPGHAPATSTDFDDNFGDDFGATAQAVPASSAEPTVSGRHDASELAAAGGLGAGAGLLGAGALRTDEPSKQLESDPAASGPFGSDATAADMNRPDAADADEDEDSSDDEDDGPEEVGGYKARGYDTPVGGAADRFPDVDAQADQDGARTVPGGLEDVTEVPASSAPVDPTAIGEIGGRTASTTSIAPVSRQDTVSSDLNEYSALESAQTKDADSSHMGAGTAAAGGIGLAALTAGAGASTLGERGHGDETPNVTTPADDNVPLSQLLGSQKTLEPATGLDPSASPTLSTRARRAPPPAPVRSATTLSTSSANARPVAPTVLAAEPTTTAGTADPVTAVGESSGASTNPFGMDDFGSAPAASTVPQQKATNDSGSGSNFDDFDSAFEDLGPSEAVPTAAAAGATGATTGGASTGFDDAFDNDFDFVPSFSAPGAAAGGDGASRGVSTSGAAGANNAFDDFDAAFDSNAGAPKTTGAGAFSGSASAFPAVGAAAGLGAAAGSTSASTADRGTSSGFSFEDAFDPTSSSTAAAPAPALNTAVTSTSTPGVTSPTAPAGTYAPPPGPPPGFSSSAPPPVPARSTAIAEAEDYTGALPDDAAPVKQLCGMGFTRANVILALEKSNYRTEKALERLLAST
Length1763
PositionMiddle
OrganismKalmanozyma brasiliensis (strain GHG001) (Yeast) (Pseudozyma brasiliensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Kalmanozyma.
Aromaticity0.05
Grand average of hydropathy-0.366
Instability index45.06
Isoelectric point4.47
Molecular weight180808.29
Publications
PubMed=24356824

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
calcium ion binding	GO:0005509	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33233
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     524.83|      51|      55|    1557|    1607|       1
---------------------------------------------------------------------------
  708-  749 (50.16/12.98)	PSA.AAPV....VTGAQ.S...T.PF........GST...A...............AAQRSAP..GPFD....DDF........FGG..GGS...........SS
  750-  803 (43.65/10.11)	TP..TAAQ....PQPVARA...LSPA........ATGgsfG...............SASAFRSPGLA......SPGiASP..SASTSrlGTF...........AA
 1010- 1057 (55.92/15.52)	AP...TSR....GTAADSV...VSPA........AST...R...............SYNPFDRFGAGAG....SQP.ATP...TTGQ..HPS...........VG
 1058- 1104 (38.69/ 7.93)	TSL.AAGA....GAGAVLG...............GVV...A...............AATHHDD.....G....SHE.TQQ..DTREA..DPF......gvpdtEP
 1171- 1211 (44.27/10.39)	ASElAAAG....GLGAGAG...LLGA........GAL...R...............T....DEPSKQLE....SDP.AA.......S..GPF.............
 1249- 1293 (34.55/ 6.11)	...............KARG...YDTP.........VG...G...............AADRFPDVDAQAD....QD..GA...RTVPG..GLE....dvtevpaSS
 1418- 1485 (40.98/ 8.94)	TRA.RRAP....PPAPVRSattLSTS........SAN...ArpvaptvlaaeptttAGTA.DPVTAVGE....SSG.AST..NPFGM..DDF...........GS
 1486- 1530 (53.05/14.26)	AP..AA.S....TVPQQKA...TNDS........G.S...G...............SN..FDDFDSAFE.....DL.GPS..EAVPT..AAA...........AG
 1559- 1615 (82.55/27.25)	APG.AAAG....GDGASRG...VSTS........GAA...G...............ANNAFDDFDAAFD....SNA.GAP..KTTGA..GAF.....sgsasaFP
 1616- 1677 (41.33/ 9.09)	AVG.AAA.....GLGAAAG...STSA........STA.drG...............TSSGF.SFEDAFDptssSTA.AAP......A..PALntavtststpgVT
 1678- 1736 (39.67/ 8.36)	SPT.APAGtyapPPGPPPG...FSSSapppvparSTA...I...............A.EA.EDYTGALP....DDA..APvkQLCGM..G.F.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.51|      18|      18|     516|     533|       2
---------------------------------------------------------------------------
  506-  523 (29.42/11.54)	PGLYEQAKGSGGAGS........RVL
  524-  549 (26.54/ 9.49)	PGSPLAAQNTGGSASgfgssgipRQM
 1354- 1370 (26.55/ 9.49)	GGIGLAA.LTAGAGA........STL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     263.49|      54|     183|     189|     242|       3
---------------------------------------------------------------------------
  136-  178 (50.33/22.09)	.........DWIEEDGGYTVFGQLWPIPD.VTPTLEQLGI....PVLYpLEGTNRKE.
  189-  242 (96.05/50.00)	QTYREIT.ADLLKPAQPYDVWVPAVPDPN.LTPEQQQQQMATN.PGFW.TQSTEAKDR
  372-  428 (72.87/35.85)	QRGETITdASTKRPGPPPTMEGVNLPLTAqLTGGQSGSAVPTNmPGVI.EIKTEDRAR
  551-  582 (44.24/18.37)	.....................GSSFPQPA.FQPPQQSAPAATA.P..W.DVKPDEKAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.51|      17|      17|     643|     659|       4
---------------------------------------------------------------------------
  643-  659 (30.38/15.46)	LINDQLAGKPLPQALPP
  661-  677 (30.12/15.26)	LVPPSMRSLDLPAAVNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.58|      14|      32|     310|     323|       5
---------------------------------------------------------------------------
  310-  323 (23.43/10.71)	LFNLADPERTGIVT
  344-  357 (25.27/12.13)	IWAMADSANNGFLT
  465-  478 (24.88/11.83)	IWNLADTQARGALD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.81|      15|      18|     892|     909|       6
---------------------------------------------------------------------------
  897-  924 (12.47/ 9.77)	SAELKTLREDvireeselsalkaEKDEL
  925-  940 (18.33/ 9.71)	EQALMRDRED............vRDMKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.35|      17|     354|     624|     640|       7
---------------------------------------------------------------------------
  624-  640 (28.76/19.32)	SDI..TQSGTLSKEEFAVA
  989- 1007 (22.58/13.35)	SEIeaVQRGELGDEEVGAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.38|      18|     289|     324|     341|       8
---------------------------------------------------------------------------
  324-  341 (33.60/21.01)	GDAAVAFFAKSKLPPAVL
  445-  458 (19.41/ 8.73)	GDRAKEIFVKSKLP....
  600-  617 (32.37/19.94)	GAAVVPFFMQSKLTEPVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.76|      25|      26|     826|     851|       9
---------------------------------------------------------------------------
  826-  851 (35.58/26.07)	QSAEFGNKSiQLQSTEKAVSDLQSQR
  855-  879 (36.39/21.88)	ESSIATNAS.SLAELETRLSTVRGQH
  880-  893 (19.80/ 8.56)	E............SETKLVKDLEDRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.31|      12|     289|    1153|    1164|      10
---------------------------------------------------------------------------
 1116- 1127 (20.02/ 9.35)	AFAIPAESTATS
 1132- 1142 (20.32/ 9.63)	GHA.PATSTDFD
 1153- 1164 (19.96/ 9.30)	AQAVPASSAEPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.97|      13|      18|     950|     962|      13
---------------------------------------------------------------------------
  950-  962 (21.03/12.99)	KSL....KEQLEKLRKD
  967-  983 (15.93/ 8.10)	KGLvaisKKQLATAEGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.41|      13|     125|    1214|    1226|      14
---------------------------------------------------------------------------
 1214- 1226 (22.22/10.87)	DATAADMNRPDAA
 1340- 1352 (22.19/10.85)	DADSSHMGAGTAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33233 with Med7 domain of Kingdom Fungi
Unable to open file!