<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33229

Description Uncharacterized protein
SequenceMSFAPLPAPGSAASSSIWARRMITKSVPATDAEVDMDVLSLLLDANLGSFGEQDLASSPVSLHSPHSPWSSAAAAPSMYRASSFGAAPTSCNVDPFRSTSPAPFPAIQRSRSMDTAQYEDGYNLEMHAAHTAVKAALDVLEEPSLKRGLRISTSIGAANGPSPNGGALGLRGCLTAPLSPSLSSPVSPAESCFSGTESDGTKKKGRARMSQEKRKRLARRREREALISNLTPTSDHHHHQQQQQQQQQQQQQFLMQQQQQQQYVLNGAEMHSFLGHSSASVNASHFSHSAPSTPMRSYFAPSNGSGFPFSSSPTGTSSNYEAAFSTPLSSPRAVGFMTDLPSPALTTASLADTSGFGSIGTPSSSPTTYNAKGMDISSSPPTLVVQPPSPQRMRTNFASKQPDAFHWNGFRSTSNLASVY
Length420
PositionTail
OrganismKalmanozyma brasiliensis (strain GHG001) (Yeast) (Pseudozyma brasiliensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Kalmanozyma.
Aromaticity0.07
Grand average of hydropathy-0.489
Instability index72.29
Isoelectric point8.97
Molecular weight44608.94
Publications
PubMed=24356824

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33229
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     134.22|      33|      33|     277|     309|       1
---------------------------------------------------------------------------
   70-  105 (28.58/ 7.70)	..S.........SAAAapsmyRASS..........F..........GAAPTSCnvdPFRS....TSPAPFP
  107-  150 (26.11/ 6.44)	IqR.........SRSM.....DTAQ..........YedgynlemhaAHTAVKA...ALDVLEEPSLKRGLR
  151-  200 (26.89/ 6.84)	I.StsigaangpSPNG.....GALGlrgcltaplsP..........SLSSPVS...PAESCFSGTESDG..
  277-  308 (52.64/20.07)	..S.........SASV.....NASH..........F..........SHSAPST...PMRSYFAPSNGSGFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.93|      44|      46|     320|     365|       2
---------------------------------------------------------------------------
  320-  365 (71.51/35.47)	YEAAFSTPLSSPRAvgFMTDLPSPALTTASLA..DTSGFGSIGTPSSS
  369-  414 (78.41/34.62)	YNAKGMDISSSPPT..LVVQPPSPQRMRTNFAskQPDAFHWNGFRSTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33229 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GFGSIGTPSSSPTTYNAKGMDISSSPPTLVVQPPSPQRMRTNFASK
2) LGHSSASVNASHFSHSAPSTPMRSYFAPSNGSGFPFSSSPTGT
3) SPVSPAESCFSGTESDGTKKKGRARMSQEKRKRLARRREREALISNLTPTSDHHHHQQQQQQQQQQQQQFLMQQQQQQQ
355
274
184
400
316
262










Molecular Recognition Features






MoRF SequenceStartStop




1) IWARRM
17
22