<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33226

Description Uncharacterized protein
SequenceMVKSDDDVIKEFGELVNMSATELEKWLKGKDSTSSGWTNGEGGETVGHQSGTKIVDILKRNPDKKKDKYTDDDIKHMRKVVSYNKRHLAQEEHLKQKKSKEELQKTKSYKSLKTFETTTDLTTNIPAHLRSPAGQPDASSSSSASSSNFRSDVALPTALNLGKIGTSATTASTAAAASTSNSRLSNSAEYLDSLEEGVNKTIDAEVETLLSSYKELVSLASIADKDKYRVAQEAFQTEARADIMVRSTQTLSLLSEALKLSLLLSKSLDPALNDEAVELIKSTEAEKLRCALLLGEIMGLDVGKAEDLVNDMDRTFIKTHTATEDLEDDEMEDVSAG
Length337
PositionHead
OrganismKalmanozyma brasiliensis (strain GHG001) (Yeast) (Pseudozyma brasiliensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Kalmanozyma.
Aromaticity0.04
Grand average of hydropathy-0.578
Instability index33.79
Isoelectric point5.05
Molecular weight36773.62
Publications
PubMed=24356824

Function

Annotated function 
ECO:0000256
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats
>MDP33226
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.14|      30|      32|     121|     152|       1
---------------------------------------------------------------------------
   93-  117 (23.68/10.20)	..........HL.KQKKSKEELQKTKSYKSlKTFET
  120-  151 (44.84/33.47)	D..LTTNIpaHL.RSPAGQPDASSSSSASS.SNFRS
  152-  183 (29.62/15.28)	DvaLPTAL..NLgKIGTSATTASTAAAAST.SNSR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.12|      21|      32|     244|     269|       2
---------------------------------------------------------------------------
  244-  269 (23.65/35.22)	MVRSTqTlsllSEALKLSLLLSK..SLD
  279-  301 (30.46/23.48)	LIKST.E....AEKLRCALLLGEimGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.26|      29|      29|      11|      39|       3
---------------------------------------------------------------------------
   11-   39 (51.70/38.01)	EFGELV.NMSATELEKWLK.GKDSTSSGWTN
   41-   71 (41.56/29.04)	EGGETVgHQSGTKIVDILKrNPDKKKDKYTD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33226 with Med22 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GKDSTSSGWTNGEGGETVGHQSGTKIVDILKRNPDKKKDKYTDDDIKH
29
76










Molecular Recognition Features






MoRF SequenceStartStop




1) KEFGELVNMSATELEKWLKGK
2) TKIVDILKR
10
52
30
60