<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33226

Description Uncharacterized protein
SequenceMVKSDDDVIKEFGELVNMSATELEKWLKGKDSTSSGWTNGEGGETVGHQSGTKIVDILKRNPDKKKDKYTDDDIKHMRKVVSYNKRHLAQEEHLKQKKSKEELQKTKSYKSLKTFETTTDLTTNIPAHLRSPAGQPDASSSSSASSSNFRSDVALPTALNLGKIGTSATTASTAAAASTSNSRLSNSAEYLDSLEEGVNKTIDAEVETLLSSYKELVSLASIADKDKYRVAQEAFQTEARADIMVRSTQTLSLLSEALKLSLLLSKSLDPALNDEAVELIKSTEAEKLRCALLLGEIMGLDVGKAEDLVNDMDRTFIKTHTATEDLEDDEMEDVSAG
Length337
PositionHead
OrganismKalmanozyma brasiliensis (strain GHG001) (Yeast) (Pseudozyma brasiliensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Kalmanozyma.
Aromaticity0.04
Grand average of hydropathy-0.578
Instability index33.79
Isoelectric point5.05
Molecular weight36773.62
Publications
PubMed=24356824

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33226
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.14|      30|      32|     121|     152|       1
---------------------------------------------------------------------------
   93-  117 (23.68/10.20)	..........HL.KQKKSKEELQKTKSYKSlKTFET
  120-  151 (44.84/33.47)	D..LTTNIpaHL.RSPAGQPDASSSSSASS.SNFRS
  152-  183 (29.62/15.28)	DvaLPTAL..NLgKIGTSATTASTAAAAST.SNSR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.12|      21|      32|     244|     269|       2
---------------------------------------------------------------------------
  244-  269 (23.65/35.22)	MVRSTqTlsllSEALKLSLLLSK..SLD
  279-  301 (30.46/23.48)	LIKST.E....AEKLRCALLLGEimGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.26|      29|      29|      11|      39|       3
---------------------------------------------------------------------------
   11-   39 (51.70/38.01)	EFGELV.NMSATELEKWLK.GKDSTSSGWTN
   41-   71 (41.56/29.04)	EGGETVgHQSGTKIVDILKrNPDKKKDKYTD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33226 with Med22 domain of Kingdom Fungi
Unable to open file!