Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MRGRLTGYCPTDLVKQVYFRTSNGCVGLPHVSQGSGCQLNGQNCYVEVTMGCPRSGSDKASHINSNSLRNLHKHNVSESPSVGGGDPKGSPDNMSAYEKTFIYPAEAVLVPVLQTSFSRSSLRRFWLQNWIGPSMAGSSFLMHCFGNMDSLEGSWIETNGIHAQRGYNSSSNSNNSSISSISGSSSDSDYQMNARTGDLEADADSLTCRQSGLSSNDQLENEGPKLGSKRPRTGMIESFGQMGTGTNASTDFGSVENTSAITGVANDQIGPHWDWDDDDDRGMGMDIQALLSEFGDFGDFFENENLPFGEPPGTAESQSFMFSAPDCGDVGSSPVVAMDVSDQMLMPNFSSFESFNPLPTMAVEECMGKSQEVTNNTLTSGQANQSQASSTGEFDHLMKAEALMTFAPEYGAVETPTSELSSSIFRSPYLPKSYRVESSNSSSNNYVYGATPPGSPCFDGSDEKNGTPVSKACSGKHDSSALLHSKKYYSHVESSKEQNDRKSVTHKDSNAKSDGLVLSPFSNLSSTNAIKSLPRKMTEGTLGVEHIFLSKKTVLATEVECLMFQASMCRIRHVLLYSSNPSPISLSRFTGSTVLNQLPGDLSSMTESTSGRYELKKKESIPVRIAGDFDGGLLDGHLNAPVGVWRSVGVAKVSKPTNSSSIEVSPSMPHGSFTEEGMISYGQRQPLQELLDGLPLLVQQATSFVDVALDADCGDGPYGWLALQEHWRQEFSCGPSMVHAGCGGTLASCHSLDIAGVELVDPLSADIHASSVISLLQSEIRTALKSAFGSLDGPLSVTDWCKGRGQSVDAAALGDGSTESISECRDSSSTITVGEALSPSQSSGGGSSSLKVAMDGTKLDETGQRRLNQDIGSSESDHQLCARLKPTLFVLPSPAILVGYQDDWLKTSATSLQFWEKAPLEPYALPKPITYNVICPDIDPLTSAAADFFQQLGAVYETCKLGTHSPQNLGNQMEIDSGKSPSSGFVLLDCPQSMKIESNNASLVGSISDYFLSLSNGWDLTSYLKSLSKALKTMKLGPCSSTQQKEGNSGPCTVIYVVCPFPEPLAILQTVIESSASLGSVAISSDRERALLHSQVGKALSCPAAVDETSISNVLAISGFSIPKLVLQILTVDEIFRVTSPAINELVLLKETAFTVYNKARRISRGSSGDVVHSSSLSSRSHSVMNQMASIPGMWKDCVGSRMTGPSLSREGEIDASLRPGTWDNSWQATRSGGLNCDPNRNGDFLIQDEIRFMFEPLFVLAEPGSFDHGVSSTFNGNSTSDDSTGGFMMSGSTAGSADTGSSSQLDRSEQDGFGSGHHKSVPSLHCCYGWTEDWRWLVCIWTDARGELLDSHIFPFGGISSRQDTKGLQCLFVQILQQGCQILQTCCSPDSGVAKPRDFVITRIGSFYELEYLEWQKAIYSVGGSEMKQWPLQLRRSVPDGMPSSTNGASLQQQQEISLIQERALPSSPSPLYSPHSKASGFMKGGLGQPVGRKQLIGGHTMVDNSRGLLQWVQSISFVAISIDHSLHLVHQADSPSSGGTQGGNGVGPSGYLEGFTPVKSLGATPASYILIPSPSMRFLPPAPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKSVPSMRKDHKNKLKDEWPSVLSVNLIDYYGGNNISQDKVTRVIIKQGGRTASSEPKDFEVETHLILESIASELHALSWMTASPAYLNRRTALPFHCDMVLRLRRLLHFADRELSQQADNPQS |
Length | 1742 |
Position | Kinase |
Organism | Citrus clementina |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.303 |
Instability index | 51.58 |
Isoelectric point | 5.33 |
Molecular weight | 187202.35 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP33224 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 643.68| 181| 225| 205| 395| 1 --------------------------------------------------------------------------- 87- 175 (70.30/36.67) ...............................................................................................................PKGSPDNmSAYEKTFIYPA....EAVLVPVLQTSFSRSSL....................RRFWLQNWIgPSMAgssfLMHCFGNMDSLEGSWIeTNGiHAQRGYNSS.....SNSNN 205- 395 (296.50/226.90) SLTCRQSGLSSNDQLENEGPKlGSkrP.RTGMIESFG....QMGTGT.NASTDFGSVENTSAI..TGVANDQIG.PHWDWDDDDDrGMgmdiqaLLSEFGDFGDFFENENLPFGEPPG.TAESQSFMFSAPDCGDVGSSPVVAMDVSDQML................MPNFSSFESFNPL.PTMA....VEECMGKSQEVTNNTL.TSG.QANQSQASS.....TGEFD 433- 630 (234.40/155.77) SYRVESSNSSSNNYVYGATPP.GS..PcFDGSDEKNGtpvsKACSGKhDSSALLHSKKYYSHVesSKEQNDRKSvTHKDSNAKSD.GL......VLSPFSNLSSTNAIKSLPRKMTEG.TLGVEHIFLSKK...TVLATEVECLMFQASMCrirhvllyssnpspisLSRFTGSTVLNQL.P............GDLSSMTES...TSG.RYELKKKESipvriAGDFD 1150- 1208 (42.49/16.97) .................................................................................................................KETAF.TVYNKARRISRGSSGDVVHSS..SLSSRSHSV................MNQMAS......I.PGM.....WKDCVG..SRMTGPSL........................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 416.84| 116| 686| 773| 897| 3 --------------------------------------------------------------------------- 773- 897 (179.97/86.93) ISLLQSEIRTALKS...........AF.....GSLDGPLSVTdwCKGRGQSVDAAA..LGDGST............ESISECRDSSSTITVGEAL.....SPSQSSGGGSSSLKVAMDGTKLDETGQRRLnqdiGSSESDHQLCArlKPTLFVLPsPAIL 1246- 1320 (82.84/27.79) ..LIQDEIRFMFEP...........LFvlaepGSFDHGVSST..FNGNSTSDDSTGgfMMSGST............AGSADTGSSSQ.......L.....DRSEQDGFGSGHHK.............................................. 1458- 1586 (154.03/59.77) ISLIQ...ERALPSspsplysphskAS.....GFMKGGL.........GQPVGRKQ..LIGGHTmvdnsrgllqwvQSI.....SFVAISIDHSLhlvhqADSPSSGGTQGGNGVGPSGYLEGFTPVKSL....GATPASYILIP..SPSMRFLP.PAPL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 123.39| 36| 493| 898| 951| 4 --------------------------------------------------------------------------- 905- 941 (62.47/89.00) LKTSATSLQFWEKAPL......EPYALPKPITYnVICPDIDPL 1024- 1065 (60.92/33.98) LKSLSKALKTMKLGPCsstqqkEGNSGPCTVIY.VVCPFPEPL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.75| 13| 685| 414| 430| 5 --------------------------------------------------------------------------- 414- 428 (20.14/18.13) ETPTSelSSSIFRSP 654- 666 (23.61/ 7.53) SKPTN..SSSIEVSP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 135.54| 41| 629| 958| 1000| 7 --------------------------------------------------------------------------- 958- 1000 (66.83/45.12) TCkLGTHSPQnLGNQMEIDSGKSP.SSGFVLLDCPQSMKIESNN 1590- 1631 (68.71/38.12) TC.LTAESPP.LAHLLHSKGSAIPlSTGFVVSKSVPSMRKDHKN --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DIQALLSEFGDFGDFFENENLPF 2) FRSPYLPK | 286 425 | 308 432 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab