<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33220

Description Uncharacterized protein
SequenceMSHLEYYHLAVKQFLHAFKKENSVSAQQCTQLQPSGGQSQMPQLNSALTGKPVGQSPLSSTQQVIPSSQPNMMNLPRSGSLFELEQQNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPATKLPPQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQSDNSHQMPLPTTPHHFQYPSHMSQHSSTQVYQKNLPLALSKLGTLSYSANSPSITSSPSIPFTPFSIPADSENHPSDISSLLISRNLGHPQRTLSLNLVDTENEVTTQFLPVAQAGISASSFPTESSSPNYEQQSSAMKEPLERLLNAVQSLSPKTLSASVREIGSALKTVDAISGTACNDSGVDVDENLVSATTCCMHGRNFSLQSGCSSEAKMEDKTNPIALDETDSINQSDGQIWDIDTSRIIKRQRVEGLICIDYSQPSNTLLDEIKCINQWLIETEIDLDSSEDPAALDAGEGTIVRCVYSAVALDENFKMQFASQILPLPLRLFVPASYPNASPVILGGLSFDWSGESIGSINLSEKTRSRFSLSLRKLSKPMSLAEMAMTWDICARTVLLEYAQSVDGGCFSSKYGKWENCVTA
Length613
PositionTail
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.436
Instability index58.99
Isoelectric point5.73
Molecular weight67141.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33220
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.50|      30|      44|     417|     460|       1
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  420-  451 (44.63/58.17)	DSINQ..SDGQIwDIDTSR.IIKRQRVEGLI..CIdY
  463-  497 (39.87/14.59)	KCINQwlIETEI.DLDSSEdPAALDAGEGTIvrCV.Y
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.68|      34|      44|      34|      67|       2
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   34-   62 (47.14/30.61)	..................................................P.SGGQSQMPQLN..SAL..TGKPVG......QSPLSSTQ
   63-  108 (31.02/16.93)	QVIPS.....................................sqpnmmnlPrSGSLFELEQQNasSSLqdAARPEG......HD.IGGAQ
  109-  192 (27.52/13.96)	QIKSSngatgrsfypatklppqnfvknafpqqrqlkhqmrqtenvrqqmqP.QFSQKKMQHMQ..MA...NIKPVAtsdmlqQNPLISQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     202.34|      55|     285|     227|     282|       3
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  227-  282 (94.46/44.70)	LPLALSKLGTLSYSANSPSITSSPSIPFTPFS...IPA..DSENHPSDISSlLISRNLGHP
  285-  320 (26.09/ 6.75)	.........TLSL..NLVDTENEVTTQFLPVAqagISA..SS..FPTESSS..........
  515-  570 (81.79/35.25)	LPLPLRLFVPASYPNASPVILGGLSFDWSGES...IGSinLSEKTRSRFS..LSLRKLSKP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33220 with Med15 domain of Kingdom Viridiplantae
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