<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33216

Description Uncharacterized protein
SequenceMAAMEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQNQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
Length572
PositionHead
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.716
Instability index59.76
Isoelectric point9.16
Molecular weight63295.37
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33216
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     237.18|      55|     321|       4|      86|       1
---------------------------------------------------------------------------
    4-   58 (93.64/15.16)	MEGVAMQDQSQQQQQ.QQQQLVP...PQPVAVERLNQAVVQQLNLEAVKTRAISLFK..AI
  324-  377 (97.33/16.16)	MNTPSPQQQQQQQQQ.QQQQQQQ...QQQQQRQKMMQLPHQQQLLAQQQFRQ.SQMQ..GL
  406-  451 (46.21/17.06)	.......SQPMGHQQfQGRQLASghvQHGIGQSQLGQG..NQLN......RHLSQFSgaAN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.22|      23|      44|     507|     529|       2
---------------------------------------------------------------------------
  469-  495 (26.16/ 6.32)	NMSA.TvSSQSLLPRMQfglAGNNPQRS
  507-  529 (45.46/16.93)	NMGA.S.NPGSMMPIQQ...QQQQQQQQ
  549-  572 (35.60/11.50)	NMVAlQ.NAQQNHPNFA...QQRQQNQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.79|      50|      64|     206|     261|       3
---------------------------------------------------------------------------
  206-  261 (80.61/56.99)	IQEQENLLRAavnSGEGL..RLPGDQRQMTPALPMHLVDLLPVGdgvHTFSDASGMYM
  272-  323 (82.18/44.74)	IGNQGNLLQA...SGAQLigRSAASPSAATSATSFDNTTASPVP...YANSPRSGTNM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33216 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQNQMSQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
252
572










Molecular Recognition Features






MoRF SequenceStartStop




NANANA