<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33209

Description Uncharacterized protein
SequenceMNEVPRKENLTAFLYTLPNLTITCMRQCHDSPIIIPTCVTRTRTRTDSIIPSMEVLRPPPQHRPTHDPARFMLERKVAVPSQLPEIVEEEGGDEKVYVALGKCVEKGLSLLHWTLQRFGSSREICILHVHQPSPVIPTLLGKLPASQASAEVLSAFRAEERQNMKKLLDNYLRICVEAKVKARIITTEADKIQKAIVQLMNIHGIQKLVMGAFPDNCMKVKMGSRKASYAAKNAPMFCEIWFVNKGKHVWTKEASESPNSFLPFCGAETRSAKMLRSRSLENCNSTSLFNPESILSRSATTLTHVGITDWVQSDPVHMVFPSSPTTSCSDMNLFSPRSSSTGSGYMSEKRESTDSDSKVEEDPLYVQHREVSIKAEELRNSAFAEFLNRKKLESEAMEAIGKVKAFESAYAREMYLQKEAEDALQTTIQDQEKLKQEKAFVTQELHRTMRNVALLNSRAQEANRRCDEATGELKLIQASIATLQQEKQRIRRQKVEAVRWLERWRSRGQAGAANYDGFIGLVEDLPESAEFSLADLQTATCNFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDWLCKS
Length887
PositionTail
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.337
Instability index53.29
Isoelectric point8.08
Molecular weight99829.45
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33209
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.12|      41|      46|     277|     317|       1
---------------------------------------------------------------------------
  277-  317 (71.87/49.11)	SRSLENCNSTSLFNPESILSRSATTLTHVGITDW...VQSDPVH
  322-  365 (67.25/45.45)	SSPTTSCSDMNLFSPRSSSTGSGYMSEKRESTDSdskVEEDPLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.03|      38|      46|     434|     471|       2
---------------------------------------------------------------------------
  434-  471 (62.74/44.50)	LKQEKAFVTQELHRTMRNVALLNSRAQEANRRCDEATG
  483-  520 (66.29/47.45)	LQQEKQRIRRQKVEAVRWLERWRSRGQAGAANYDGFIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.30|      23|     535|     107|     136|       3
---------------------------------------------------------------------------
  107-  136 (35.48/38.23)	GLSLLHwtlqrfgSSREICILHVH.QPSPVI
  649-  672 (38.82/23.41)	GLCFLH.......SSKPEKIVHGDlKPQNIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.65|      50|     762|      17|      68|       6
---------------------------------------------------------------------------
   17-   68 (88.99/72.05)	LPNLTITCMR.QCHDSPIIIPTCV...TRTRTRTDSIIPSMEVLrpPPQHRPTHDP
  780-  833 (81.66/58.39)	LVDLGLQCCElYGRERPDITPSLVkelEQLHVAEERPVPSFFLC..PILQEIMHDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.28|      18|      25|     381|     398|      10
---------------------------------------------------------------------------
  381-  398 (28.75/16.52)	SAFAEFLNRKKLESEAME
  408-  425 (29.52/17.13)	SAYAREMYLQKEAEDALQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33209 with Med32 domain of Kingdom Viridiplantae
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