<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33206

Description Uncharacterized protein
SequenceMDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISLVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYEMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPTLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIVIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDKQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSMMDASLRAPHNKSPITSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINSSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLIGRAAESLHPDVQHLLSHLKPDVNSSIYAATHPKMVQNPS
Length1611
PositionTail
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.055
Instability index47.69
Isoelectric point6.58
Molecular weight180691.68
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33206
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     395.13|     126|     181|     194|     340|       1
---------------------------------------------------------------------------
  194-  340 (195.57/166.07)	PLPSVHGIGSPAQSAIetSVCAA....MSPVKSSdvSCTGQQFTTR.VNSSVRDNAISSLRQLCCkiiltgLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRL.DKALIE...............WLHscldviWLLVDEdrcrvPFYELLRTG.LQFIE
  376-  523 (199.56/124.04)	PTFGTHRILSQTTPNI..SVEAAgnlrYSPITYP..SVLGEPLHGEdLATSIQRGSLDWERAMRC......IRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYEMiSEAVIDrivellkltnsevncWHD......WLIFSD.....VFFFLVKSGcIDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.29|      66|     241|     950|    1020|       2
---------------------------------------------------------------------------
  950- 1020 (107.80/76.76)	KTYLSHSFPQHrqyLCAGAWILMQghPENINSANLLRVLREFSPE.EVTSNIYTMVDVLLHHIH....VELQRGHS
 1194- 1264 (105.49/61.52)	KIPFSESFPQH...ISSSNPVMCP..PLDYFATLLLGLVNNVIPAlNYNSKSGSMMDASLRAPHnkspITSQSGPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     292.31|      97|     123|     657|     763|       3
---------------------------------------------------------------------------
  657-  763 (144.26/131.66)	VVSYTM.....AQPACETVMNwlssaGVTELFPGSNLPPNERlMVMREVNPLPMSLLTG....FSLNLCLKLALQMEDSIFGGQVVAsIAMVeTYTRLMLLAPHSLFrsLFSHLAQ
  781-  886 (148.05/102.70)	IVNYRLlplyrYQGKTKTLMY.....DITKIISALKVKRGDH.RVLRLAENLCMNLILSqrdfFSLKREGKGSTEFTETLNRITVIA.LAIV.IKTRGIADADHVLY..LQTMLEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.41|      67|     183|    1273|    1347|       4
---------------------------------------------------------------------------
   89-  181 (80.17/36.83)	FPDQDQlRSVTESVLISLVVQCCShVPRAEFILfaLRSLCSIgYINwdtFLPSLLSSVS...SAEMSAGQGSqampavsatslqqsgMLPTSsgiP
 1274- 1343 (109.25/66.96)	YQNQDP.GTYTQLVLETAVIEILS.LPVSASQI..VSSLVQI.VVN...IQPTLIQTSNgpyGASNSVGQGS...............VLPTS...P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     336.03|     110|     322|    1067|    1192|       5
---------------------------------------------------------------------------
 1067- 1192 (164.54/182.86)	LLDKQELQQRVKLYcMN..RGPPE.HWLYSGLFKRVELQKALGNHL...SWKERyptffDDIAARLLPVIPLI..VYRLIENDAMDSADRVLATYSSFLAYYPLRFSFvrDILayfyghlpGKLIVRILNVFDL
 1390- 1507 (171.49/138.28)	LLAQLPPDFHMQLY.MEasRIIKEsWWLADGKRSLGELDSAVGYALldpTWAAQ.....DNTSTAIGNIVALLhsFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVF..RIM........GPLLPRLVNAHTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.47|      10|    1180|     178|     188|       7
---------------------------------------------------------------------------
  178-  188 (15.52/ 8.64)	SGIpNSSNYQS
 1361- 1370 (18.95/12.44)	SGI.NSSSFVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33206 with Med23 domain of Kingdom Viridiplantae
Unable to open file!