<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33204

Description Uncharacterized protein (Fragment)
SequenceMANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIASSVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKEISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQAKENERKRKEEK
Length864
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.736
Instability index53.88
Isoelectric point5.80
Molecular weight96662.79
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33204
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.93|      15|      16|     309|     323|       1
---------------------------------------------------------------------------
  309-  323 (24.16/12.06)	VTASPNADISSSTVQ
  346-  360 (18.77/ 7.80)	VSASSASPVIASSVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.05|      13|      17|     560|     576|       2
---------------------------------------------------------------------------
  560-  576 (18.90/18.45)	ER.....DRRdlfdDHLEELRQ
  578-  595 (18.15/ 8.02)	ERakaqeERR....QHLIEYRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.71|      38|      39|     205|     242|       3
---------------------------------------------------------------------------
  205-  242 (76.73/46.68)	DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERAD
  246-  283 (74.99/45.47)	DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     153.59|      18|      18|      17|      34|       4
---------------------------------------------------------------------------
   17-   34 (36.31/21.57)	PAPQSQQYV......PV.ASQHFP..P
   47-   57 (19.26/ 7.69)	PSQNMQ..............PQFP..Q
   63-   76 (27.87/14.70)	PARPGQ.........P..APSHGP..P
   82-   99 (27.17/14.13)	PLPNAQQSN......HI.ASGSSL..P
  104-  128 (17.81/ 6.51)	QAPTSYASSlgglarPFsASYTFA..P
  139-  158 (25.18/12.51)	NVNTGNQYQ......PM.SQMHVPsnP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     288.65|      63|      66|     730|     794|       5
---------------------------------------------------------------------------
  462-  519 (67.30/37.07)	............LESANVGSDWSWDQ....AMQAIINDRRYGALKTLgER.KQAFNE.........................YLGQRKKQEAEERRfKLK
  623-  650 (23.11/ 7.84)	.................................SRLEKIDRLEI..........FKE.........................YIIDL.EKEEEEQR.K..
  651-  721 (35.09/15.77)	.IQK...EV...LRRAERKNR...DE....FRKLLEGDVASGTLT....A.KTHWRDycmkvkdlhaymavasntsgstpkdLFEDVAEE..........
  732-  794 (98.36/60.28)	RIKD...AV..KLKKISLSSTWTFED....FKASILEDVTSPPISDV.NI.KLVFDD.........................LLERVKEKEEKEAK.KRK
  795-  861 (64.79/32.77)	RLADdffALlcSIKEISASSAW..EDciqlFEGS..REFSS..IGEE.SIcREIFDE.........................YVTQLKEQAKENER.KRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33204 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASS
2) IPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASP
3) MANNAPYSGAQFRPAVPAPQSQQYVPVASQHFP
4) YGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDW
35
271
1
131
112
313
33
206










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNK
255
262