<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33200

Description Uncharacterized protein
SequenceMAAKLEDGGGGGGAVWDNVMEVTKVAQEKGSDPLLWAVQLSSSLNSAGVSLPSVELAHVLVSYICWDNNVPIAWKFVEKALTLRIAPPLLLLALLSTRVIPNRRLQPAAYRLYMELLKRHIFQLKCQIHGPDYPKVMKAIDAVLHLSEIFGLSASEPGILVAGYIFSVLLQLLDASLDDERLLELTPERKSRWPTKPLEMEIDGHDVYDEERTEYHERLRNMNTVMAIEIIGKILQNKVTSRIVYLAHRNLRTHWVVFIQRLRLLGANSSALKSSTILTPEDLLQLTSDTHLGLSQECKTSPQPKFDAVLAFGSLASSAGLCHGASRSALWLPLDLVLEDALDGYQVNATSAIEIITSLIKTLQAINGTTWHETFLGLWIAALRLVQRERDPIEGPMPRLDPRLCMLFSVTTLLIADLIDEEESAPNDETECGFTYPWKEKKVPGKRRNDLVSSLQVLGDYQGLLTPPQSVVSAANQAAAKAMLFVSGIDVGSAYFECINMKDMPVNCSGNLRHLIVEACIARNLLDTSAYFWPGYVNGHINQIPNTVPAQVPGWSSFTKGAPLTPLMVNALVSSPASSLAELEKVFEIAIKGADDEKIFAATVLCGASLIRGWNIQEHTVQFITRLLSPPAPAEYDGGESHLIGYAPMLNVLMVGISPVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVSWTLPTGEEISAHAVFSNAFALLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLSVRNSHLLSSQSIHQDRNKRRLSAAASSSSPEPIFVDSFPKLKVWYRQHQRCIAATLSGLVHGTQVHQTVDELLSMMFRKINRASQGLNSVASGSSSSSGPGNEDSSLRPKLPAWDILEAVPFVVDAALTGCAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVSRGVWKPAFMNGMDWPSPATNLTNVEEHIKKILATTGIDIPSLAAGGTSPATLPLPLAAFLSLTITYKIDKASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAVVQLLKSCFTATLGLNSNPISSNVGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSMRDILFITEEIVSLLMHSVREIAFSGLPQEKMEKLKASKNGMRYGQVSLAAAITRVKLAASLGASLVWLSGGLGSVHSLIYETLPSWFISVHKSEHKYSDGLVSMLGGYALAYFAVLCGALAWGVDSSSLASKRRPKILGFHMEFLASALDGKISLGCDSATWHAYVSGFMSLMVSCTPTWVLEVDVEVLKRLSKGLKQWNEEELAIALLGIGGLGTMGAAAELIIEKDS
Length1331
PositionTail
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy0.169
Instability index45.63
Isoelectric point6.27
Molecular weight144624.56
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33200
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.62|      51|      54|    1117|    1169|       1
---------------------------------------------------------------------------
 1117- 1169 (75.39/62.22)	MHSVREIAFSGLPQEKMeKLKASKNGMRYGQVSLAAAITRVKLAASLGAsLVW
 1174- 1224 (92.23/65.84)	LGSVHSLIYETLPSWFI.SVHKSEHKYSDGLVSMLGGYALAYFAVLCGA.LAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.06|      40|      42|     922|     961|       2
---------------------------------------------------------------------------
  922-  961 (70.39/35.90)	PAFMN.GMDWPSPATNLTNVEEHIKKILATTGIDIPSLAAG
  965- 1005 (60.66/30.04)	PATLPlPLAAFLSLTITYKIDKASERFLNLAGPALESLAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.89|      25|      56|    1234|    1258|       3
---------------------------------------------------------------------------
 1234- 1258 (45.06/23.48)	KRRPKIL.GFHMEFLASALDGKISLG
 1292- 1317 (39.82/20.03)	KRLSKGLkQWNEEELAIALLGIGGLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.69|      43|     102|     572|     614|       4
---------------------------------------------------------------------------
  572-  614 (71.58/41.09)	LVSSPA........SSL...AELEKVFEIAIKG.....ADDEKIFAATVLCG..ASLIRGW
  627-  670 (37.27/17.95)	LLSPPApaeydggeSHLigyAPMLNVLMVGISP.....VDCVQIFS...LHG.........
  672-  720 (56.84/31.15)	.VPQLA........CSL...MPICEVFGSCVPNvswtlPTGEEISAHAVFSNafALLLKLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.51|      15|      49|     330|     344|       6
---------------------------------------------------------------------------
  330-  344 (27.55/12.75)	LWL.PLDLVL..EDALDG
  378-  395 (18.96/ 6.87)	LWIaALRLVQreRDPIEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.35|      18|     161|     141|     163|      11
---------------------------------------------------------------------------
  141-  163 (23.01/26.12)	DAVLhlseIFGLSASEPGiLVAG
  307-  324 (34.35/20.00)	DAVL....AFGSLASSAG.LCHG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33200 with Med33 domain of Kingdom Viridiplantae
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