<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33180

Description Uncharacterized protein
SequenceMAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTESSDDDDSHDEL
Length667
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.452
Instability index27.55
Isoelectric point5.10
Molecular weight73551.38
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33180
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.72|      18|      20|      78|      96|       1
---------------------------------------------------------------------------
   78-   96 (26.21/19.21)	DSERLIGEAAKNQaAVNPD
  101-  118 (29.51/17.29)	DVKRLIGRKFEDK.EVQRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.39|      27|      27|     563|     589|       2
---------------------------------------------------------------------------
  531-  560 (19.18/ 8.55)	.....EKI..TITNdkgrlsqeEIERMVREAEEFAEE
  561-  587 (41.41/27.05)	DKKVKEKI..DARN........SLETYVYNMKNQIND
  588-  616 (35.80/22.38)	KDKLADKLesDEKD........KIETAVKEALEWLDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     468.12|     162|     193|     150|     323|       3
---------------------------------------------------------------------------
  150-  323 (229.12/201.02)	EEISAMILTK.M....KETAEAFLGKKIKDAVVTVPAYFNDAQ.RQATKDagIIAGLNVARIINePTaAAIAYG.......LDKKGGE..KNILVFDLggGTFDVSILTIDNGVFEVLSTN.....GDTHLGGEDFDQRVmEYFIKLIKKKhgKDISKDKRAIGKLRREA.ERAKRAlSSQHQVRVEIESlfDGI
  335-  517 (239.00/164.43)	EELNNDLFRKtMgpvkKAMEDAGLEKNQIDEIVLVGGSTRIPKvQQLLKD..YFDGKEPNKGVN.PD.EAVAYGaavqggiLSGEGGDetKDILLLDV..APLTLGIETVGGVMTKLIPRNtviptKKSQVFTTYQDQQT.TVSIQVFEGE..RSLTKDCRLLGKFDLSGiPPAPRG.TPQIEVTFEVDA..NGI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33180 with Med37 domain of Kingdom Viridiplantae
Unable to open file!