<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33177

Description Uncharacterized protein
SequenceMAGKVEGKSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVAGPGDKPMIVVTYKGEEKQFAPEEISSMVLTKMKEIAKAYLGQALKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQEAEKYKAEDEEVKKKVEAKNSLENYAYNMRNTVRDEKIAGKLDPADKQKIEKAIDEAIEWLDGNQLAEVDELEDKLKELEGLCNPIIAKMYQGGASGDVPMGGGAEMPGGGHGKAETGGAGGGPKIEEVD
Length656
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.426
Instability index34.74
Isoelectric point5.35
Molecular weight71727.48
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33177
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.93|      31|      40|     496|     534|       2
---------------------------------------------------------------------------
  496-  528 (46.36/38.21)	AEDKTAGVKNqiTITNDK..GRL...SKEEIERMVQEA
  548-  583 (42.57/18.40)	LENYAYNMRN..TVRDEKiaGKLdpaDKQKIEKAIDEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.26|      51|     189|     170|     230|       3
---------------------------------------------------------------------------
  170-  230 (64.90/69.10)	GLNVMRIINePTaAAIAYGLDKKAS.RSGEKNVLIFDLggGTFDVSLLTIeeGIfevkATAG
  362-  413 (84.35/53.12)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSL..GI....ETAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.85|      18|      21|      38|      55|       4
---------------------------------------------------------------------------
   16-   33 (18.49/ 9.35)	....TTYSCVGVWQNDRveIIA
   38-   55 (32.65/21.68)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.72/14.78)	NQvaMNPQNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.49|      20|     411|     111|     130|       5
---------------------------------------------------------------------------
  106-  125 (31.58/18.99)	MIVVTYKGEEKQFAPEEISS
  126-  145 (30.91/18.44)	MVLTKMKEIAKAYLGQALKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33177 with Med37 domain of Kingdom Viridiplantae
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