<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33176

Description Uncharacterized protein
SequenceMDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMLSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQHSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDWQEEVYQKIKTMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLERIITFLQVSKSNILPGFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSGTPLQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTTSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPRIEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA
Length1383
PositionTail
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.03
Grand average of hydropathy-0.810
Instability index72.18
Isoelectric point9.37
Molecular weight152257.60
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33176
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     666.30|      59|      59|     349|     407|       1
---------------------------------------------------------------------------
  167-  210 (52.35/ 7.05)	A........LP..SVSGLSQSPIP...SVVGQ............TV...NMQNMSGISQ.NS..GGNSM............G............Q...............GV.PS
  215-  251 (49.02/ 6.04)	NS.QRQI..QGRQQVLPQQQQQHS...Q.....................NSQ..QFLYHQ........Q............Y............................PQ.QP
  255-  313 (64.29/10.68)	KL.QQGG..LSH.TLMQPQIQQQP...Q...QQP.........NLLqpnQLQSSQQSGMQTSsvMPNMM............Q............SAPLP...........GL.Q.
  314-  345 (49.84/ 6.29)	.Q.NQ......QSSV....QQSTQ...PMMQQHP..................QSVL..RPQ.......Q............Q............Q................Q.QT
  349-  407 (122.82/28.48)	HQ.QQTP..MPQQSVMPPQQQQQQ...QLMGQQP.........NTV...NMQQSQLIGQQNN..VGDMQ............Q............QQRLL...........GQ.QS
  415-  469 (84.29/16.76)	QQ.QQQQ..QQQQ....QQQQQQQ...QLMAQQ..........NLS...SMHHQQL.GPQSN..VSGLQ............Q..........qpQQQLL...........GT.QS
  475-  525 (58.77/ 9.01)	QT.NQHPahMLQQPKVPVQQQMQQsapNLL...P.........NQG...QQQQSQ.............P............Q............QQQMM...........SQiQS
  704-  792 (53.59/ 7.43)	.Q.QQGQ..LP.PTHMHSMQQQQS...QISQGQPhdnqmnsqiQSM...NLAGSMVTMQPNN..VTNVQ............HnsvpsvsgvstsQQNMLnsvqpgpnmdsGQ.GT
  798-  853 (64.58/10.77)	HQvNAGS..LQQNSVSAPQQASIN...NLPSQ...........SGV...NMLQSNINALQSN...SNMM............Q............HQHLK...........QH.Q.
  887-  948 (66.75/11.43)	HQ.QQQH..QQQQ.....HQQAKQ...QLPAQLP..........TH...QM..PQL.NQMND..VNDLKirqgmavkpgvfQ............QHLTS...........GQ.RS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     229.35|      59|      59|     997|    1055|       4
---------------------------------------------------------------------------
  997- 1055 (105.57/57.73)	GTPLQSVNSP....FVVP...........SPSTPMAPSPMP.GDSEKPISGISSLS.NA.....GNIG......HQQTTSAQAAAPS
 1059- 1139 (56.67/27.11)	GTPGISA.SPllaeFTGPdgahgnaltaiSIKASVTEQPL.....ERLIKAVKSMSpKAlsasvSDIGsvvsmiDRIAGSAPGNGSR
 1151- 1199 (67.11/33.64)	KCRLQARN......FITQ...........DGSS..GPRKMRrYTSAMPLSVVSSAG.SM.....NDSF......KQLTGS.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.31|      17|      17|     605|     621|       6
---------------------------------------------------------------------------
  618-  637 (21.97/12.25)	YLPE..lNEMYQKIaaKLQQHD
  638-  657 (21.33/11.63)	SLPQqpkSDQLEKL..KIFKTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     235.08|      60|     468|      42|     106|       8
---------------------------------------------------------------------------
    7-   34 (32.58/ 8.90)	..RPTPPVGESNLD.....TGD.....WRTQL......QPDSRQRI........................
   42-  106 (81.70/50.34)	LKRHLPFSGQDGLNELKKiAGR.....FEEKIYtAASSQSDYLRKISLKMLSMesKSQNAMPNSLQSNnP
  530-  576 (75.93/32.93)	LQQQLGLQQQP..NPLQR...D.....MQQRL..QASGQA......SASLL....QPQNVMDQQKQLY.Q
  577-  617 (44.86/15.53)	PQRALPETSSTSLDSTHQ.TGQangvdWQEEVY..........QKIK.TMKEM.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.22|      62|     113|    1200|    1269|       9
---------------------------------------------------------------------------
 1200- 1269 (85.51/89.95)	ETSDLESTATS..SIKRPRIEANHALLEEIR..EINQRlidTVVdisDEDADPTAAGSAGeGGEGTVVKCsFSA
 1317- 1382 (98.71/73.50)	EYEDLSVKAKSrfSISLRSLSQPMSLGEIARtwDVCAR...TVI...SEYAQQSGGGSFS.SKYGTWENC.LSA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33176 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSG
2) LQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTTSAQAAAPSLA
3) LSMESKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNN
4) LSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQHSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDW
5) MDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNEL
691
1000
87
164
1
997
1057
152
603
57










Molecular Recognition Features






MoRF SequenceStartStop




1) RKMRRY
1169
1174