<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33172

Description Uncharacterized protein
SequenceMYIAPKIMVGLELYCVLFPSLHSLIHQAESPFIRSDQIMTSPAWLPPEVQQLTANAPISGKPVGGSLVASSTPTPTSNGSDTATNDSISGPSQAKSVTATGGVIPQSSFSFQNSEGSGHSASSVINSNPSVPPGVSSFTYSASQTVVGYSPNQQFQPNMNKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTHPSLPPVGVSPQRPLLQPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSMRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPDPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
Length1015
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.764
Instability index51.62
Isoelectric point8.43
Molecular weight111548.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33172
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     456.61|      66|      66|     679|     744|       1
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  619-  674 (72.84/39.01)	.......FKEMLKE..RGVAPFSKWEKELPKIVFDPRFKA....IQSQSARRALFERY.VK..TRAEEERKE
  679-  744 (105.04/59.42)	QKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEA....LDRKDRELLLNERV.LPL.KRAAEEKAQ
  747-  810 (96.63/54.09)	RAAAASSFKSMLRE.KGDITLSSRWSKVKDILRDDPRYKS....VRHEDREVIFNEYV.REL.K.AAEEEAE
  816-  852 (38.39/17.17)	RR...EEQEKLKERERE.........MRK.................RKEREEQEMERVrLKV.RR..KE...
  854-  917 (71.39/38.09)	....VTSFQALLVETIKDPQAS..WTESRPKLEKDPQGRAtnadLDSSDREKLFREHI.KTLyERCAHD.FR
  922-  977 (72.32/38.68)	EVITAEAAAQETED.GKTVLNS..WSTAKRVLKPDPRYSK....MPRKEREALWRRHA.EEI.QR.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     430.55|      77|      82|     209|     285|       2
---------------------------------------------------------------------------
   53-  133 (72.72/36.58)	TANAPISGKPvgGSLV...ASSTPTPTsnGSDT.A.TNDSISGPSQAKSVTATGGVIPQSSfSF..............QNSeGSGhSA.SSVINS..NPSVPP..
  134-  204 (37.91/14.92)	.GVSSFTYSA..SQTVvgySPNQQFQP..NMNKLEaVED...........AGLGSSTSTNS.QPvqasvrtfsdstvaTSS.ATA.LS.TT..............
  209-  285 (138.21/77.32)	PTIPSFSTPP..GLFV...TPQTQAPP..GLLTLR.TKDTSSAFGDFYSSAGLRPSVPTPS.AP..............SNS.GSA.IQ.HQIYPT..HPSLPPVG
  291-  326 (54.85/25.46)	PLL.....................QPP......................QMGVRPWLPFLP.YP..............AAY.PSP.FP....LPA..H.GMPN..
  327-  371 (52.58/24.05)	...PSVSQ.......I...DAQ...PP..GLSSMR.T............AA...........AT..............SHS...A.IPgHQLVGTsgNTEAPPSG
  376-  433 (74.28/37.55)	EHVHDVSSRI..GASV...NEQLDA......WTAH.KTDTGIVY..YYNAVTGESTYEKPA.G.............................FKG..EPDKVPV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.66|      41|      58|     465|     505|       3
---------------------------------------------------------------------------
  465-  505 (65.82/43.33)	MKVSSWQIPSEVTELKKK..EDDDTLKEQSVPNTNIVIEKGSN
  524-  566 (57.57/36.81)	LRTSSMPGSSSALDLIKKklQDSGTPTASPAPVSSAAATSESN
  573-  600 (32.27/16.82)	VTVKGLQNENTKDKLKDI..NGDGTMSDSS.............
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33172 with Med35 domain of Kingdom Viridiplantae
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