<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33169

Description Uncharacterized protein
SequenceMDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPGSMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMLSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQHSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDWQEEVYQKIKTMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLERIITFLQVSKSNILPGFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSGTPLQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTTSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPRIEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA
Length1369
PositionTail
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.03
Grand average of hydropathy-0.817
Instability index72.46
Isoelectric point9.37
Molecular weight150720.83
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33169
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     567.78|      59|      59|     349|     407|       1
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  167-  210 (52.92/ 6.34)	A........LP..SVSGLSQSPIP...SVVGQ............TV...NMQNMSGISQ.NS..GGNSM............G............Q...............GV.PS
  255-  313 (64.16/ 9.42)	KL.QQGG..LSH.TLMQPQIQQQP...Q...QQP.........NLLqpnQLQSSQQSGMQTSsvMPNMM............Q............SAPLP...........GL.Q.
  349-  407 (122.59/25.46)	HQ.QQTP..MPQQSVMPPQQQQQQ...QLMGQQP.........NTV...NMQQSQLIGQQNN..VGDMQ............Q............QQRLL...........GQ.QS
  415-  469 (84.29/14.94)	QQ.QQQQ..QQQQ....QQQQQQQ...QLMAQQ..........NLS...SMHHQQL.GPQSN..VSGLQ............Q..........qpQQQLL...........GT.QS
  475-  525 (58.43/ 7.85)	QT.NQHPahMLQQPKVPVQQQMQQsapNLL...P.........NQG...QQQQSQ.............P............Q............QQQMM...........SQiQS
  704-  792 (53.58/ 6.52)	.Q.QQGQ..LP.PTHMHSMQQQQS...QISQGQPhdnqmnsqiQSM...NLAGSMVTMQPNN..VTNVQ............HnsvpsvsgvstsQQNMLnsvqpgpnmdsGQ.GT
  798-  853 (65.06/ 9.67)	HQvNAGS..LQQNSVSAPQQASIN...NLPSQ...........SGV...NMLQSNINALQSN...SNMM............Q............HQHLK...........QH.Q.
  887-  948 (66.74/10.13)	HQ.QQQH..QQQQ.....HQQAKQ...QLPAQLP..........TH...QM..PQL.NQMND..VNDLKirqgmavkpgvfQ............QHLTS...........GQ.RS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     151.27|      33|      76|     542|     574|       5
---------------------------------------------------------------------------
  542-  563 (27.33/ 8.21)	................PLQRDMQQRLQAS.......GQASASLLQ
  564-  604 (41.72/16.24)	PQNVMDQQKQL...yqP.QRALPETSSTSldsthqtGQANGVDWQ
  605-  641 (38.54/14.47)	.EEVYQKIKTMkemylPELNEMYQKIAAK.......LQQHDSLPQ
  643-  673 (43.69/17.34)	PKS..DQLEKL.....KIFKTMLERIITF.......LQVSKSNIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.73|      16|     650|     217|     234|       6
---------------------------------------------------------------------------
  217-  234 (25.00/11.79)	QrQIQgRQQVLPQQQQQH
  871-  886 (31.73/ 8.99)	M.QFQ.KQQLMQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.75|      22|      62|    1092|    1113|      10
---------------------------------------------------------------------------
  996- 1014 (23.73/ 7.62)	..SGTPLQ.SVNSPFVVPSPST
 1015- 1033 (32.60/13.33)	PMAP...SPMPGDSEKPISGIS
 1092- 1113 (35.42/15.14)	SMSPKALSASVSDIGSVVSMID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.89|      48|     107|    1039|    1089|      11
---------------------------------------------------------------------------
 1039- 1081 (64.62/37.61)	.......................................GN.......iGHQQTTSAQAAAPSL.A...IGTPGISAS.PLLAEFTGPDGAHGN
 1082- 1154 (44.22/23.78)	ALTAISikvksmspkalsasvsdigsvvsmidriagsapGN........G....SRA.AVGEDLvA...MTKCRLQAR.....NFITQDGSSGP
 1165- 1212 (32.06/13.43)	PLSVVS...................................sagsmndsFKQLTGSETSDLEST.AtssIKRPRIEANhALLEE..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.60|      11|      18|      28|      38|      16
---------------------------------------------------------------------------
   28-   38 (20.47/12.52)	PDSRQRIVN...KI
   47-   60 (16.13/ 8.06)	PFSGQDGLNelkKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33169 with Med15 domain of Kingdom Viridiplantae
Unable to open file!