<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33165

Description Uncharacterized protein
SequenceMAEMANNAPYSGAQVPHQPPMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNTGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
Length996
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-1.015
Instability index54.20
Isoelectric point6.60
Molecular weight112498.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33165
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.10|      38|      38|     198|     235|       1
---------------------------------------------------------------------------
  198-  235 (76.58/51.57)	TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERA
  239-  276 (75.52/50.75)	TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     507.85|      65|      66|     445|     509|       2
---------------------------------------------------------------------------
  388-  443 (57.08/33.84)	...EAKNNLSNMS.ASD.L.VG.......AS...DKVPPPVTEETRKDAV..R..GEK....VSDALE...EKTvEQEHF.AY.A
  445-  509 (97.26/63.48)	KL.EAKNAFKALL.ESA.N.VG.......SDWTWDQALRAIINDRRYGAL..RTLGER.KTAFNEYLG...QKK.KQDAE.ER.R
  511-  580 (79.78/50.58)	KLkKARDDYKKMLeESV.E.LT.......SSTRWSKAVTMFENDERFKAL..ERERDR.KDMFDDHLDelkQKE.RAKAQ.EE.R
  586-  644 (70.13/43.46)	.......EYRKFL.ESC.DfIK.......ANTQWRKVQDRLEADERCSRL..DKM.DR.LEIFQEYLN...DLE.KEEEE.QR.K
  655-  726 (63.65/38.69)	R..KNRDEFRKLM.E.A.D.VAlgtltakTNWR.DYCIK.VKDSPPYMAVasNTSGSTpKDLFEDVVE...ELQ.KQFQE.DKtR
  728-  785 (61.88/37.38)	.....KDAVK..L.RKI.T.LS.......STWTFEDFKASVLEDATSPPI..SDV.NL.KLIFDDLLI...KVK.EKEEK.EA.K
  787-  853 (78.07/49.33)	RK.RLEDEFFDLL.CSVkE.IS.......ATSTWENCRQLLEGSQEFSSI..GDESIC.RGVFDEFVT...QLK.EQAKDyER.K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.52|      16|      16|     861|     876|       3
---------------------------------------------------------------------------
  866-  881 (27.52/17.98)	EERDRRKLKQGRDK.ER
  886-  900 (21.72/12.16)	EKEDHSK.KDGADS.DH
  916-  932 (18.28/ 8.71)	DKKHRKRHQSAHDSlDE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.98|      16|      19|      78|      96|       4
---------------------------------------------------------------------------
   36-   53 (20.03/ 6.68)	MNAGfPS....QPLQP...PfRPLM
   57-   74 (24.19/ 9.54)	P.AR.PGppapSHVPP...P..PQV
   78-   96 (29.76/20.27)	PNAQ.PS....NHIPPsslP.RPNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.29|      19|      21|     337|     357|       5
---------------------------------------------------------------------------
  317-  333 (17.27/ 7.86)	....EVIVSSPVAV.VPIIAAS
  337-  357 (26.71/26.08)	PAlvSVPSTSPVIT.SSVVANA
  361-  380 (25.31/16.66)	PK..TVDAIAPMIDvSSSIGEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.96|      13|      15|     941|     953|       6
---------------------------------------------------------------------------
  949-  965 (16.77/ 6.36)	KKPRRlastPESENESR
  967-  979 (22.20/10.94)	KRHRR....DNRNGSRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.44|      40|      42|      99|     140|       7
---------------------------------------------------------------------------
   19-   34 (23.70/10.60)	PPMVGSMDPPRGQ............GG.L.................
   97-  126 (39.00/31.94)	............QALSS.YPPGL..GG.LGrpVAASYTFAPSSYGQ
  127-  170 (58.74/40.70)	PQLIGNVNTGSQQPMSQmHVPSIsaGGqLG..VSVSQSTVSSTPVQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33165 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
2) ASDLVGASDKVPPPVTEETRKDAVRGEKVSDAL
3) MAEMANNAPYSGAQVPHQPPMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLG
4) YGQPQLIGNVNTGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWK
847
398
1
124
996
430
107
201










Molecular Recognition Features






MoRF SequenceStartStop




NANANA