<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33161

Description Uncharacterized protein
SequenceMTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPPITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERFQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSRDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWFSVIPKTKKCLDDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQFVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLMSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNSNKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
Length1151
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.560
Instability index45.69
Isoelectric point7.56
Molecular weight129537.58
Publications









Function






Annotated function


GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33161
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.52|      15|     120|     171|     188|       1
---------------------------------------------------------------------------
  171-  188 (25.25/28.04)	HYHsscTPKPSISRLPPI
  295-  309 (28.27/19.48)	QYE...TPQPAVLKIDPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.08|      58|     712|     342|     399|       2
---------------------------------------------------------------------------
  342-  399 (104.92/68.99)	VSSYPVEREPFIPKIIKVNY...IEG.....SNDQKWSSRDFPWTKKLEANNKKVFGNHSFRPNQR
 1023- 1088 (86.16/55.23)	VSKYGVRLLETIESTIKEFYktdKNGsssndSNDSGKRRRDENEAPNSNKGDDDDFTKSTARSKKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.72|      22|      26|     118|     142|       3
---------------------------------------------------------------------------
  112-  139 (28.33/26.49)	GQNeikASVVANahfKFSDGFGNHTTEA
  140-  164 (31.39/19.25)	GQIdesAEVLAN...KIDDDEILETIDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.80|      13|      15|     925|     937|       4
---------------------------------------------------------------------------
  925-  937 (22.57/12.09)	STKLSKS.DVTPAK
  942-  955 (20.23/10.11)	SGKLSPSrNDTPSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.10|      19|      61|     818|     837|       5
---------------------------------------------------------------------------
  778-  796 (34.36/21.46)	LLQLVHF.GEKFDSAHCKKT
  818-  837 (26.74/20.19)	LVELVKLtGQQFSSSHILEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.43|      18|      18|     599|     616|       6
---------------------------------------------------------------------------
  599-  616 (34.60/22.82)	CLDDIDKFIKENHFDECG
  620-  637 (33.83/22.15)	CLSRMDCEKVAERLQECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.04|      20|     154|     842|     861|       7
---------------------------------------------------------------------------
  842-  861 (35.11/29.71)	LNQFVKKHRHETLSLHGAGK
 1001- 1020 (32.94/27.29)	LSKRVPRTEEELLEINGIGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.52|      21|      26|       9|      31|       9
---------------------------------------------------------------------------
    9-   31 (26.77/23.01)	PRLhSAEVEKAwHTLSSLQISRR
   36-   56 (38.75/20.86)	PGL.STPVEHS.DNDASHNVSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.40|      13|      26|      65|      78|      12
---------------------------------------------------------------------------
   65-   78 (21.08/16.94)	GSkFSEPMNNRQKG
   93-  105 (24.32/14.48)	GS.FHLSNNVRDAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33161 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FYKTDKNGSSSNDSNDSGKRRRDENEAPNSNKGDDDDFTKSTARSKKRASKSQNKTVEVINHNE
2) YIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNV
3) YVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
1041
33
1121
1104
85
1151










Molecular Recognition Features






MoRF SequenceStartStop




1) GRVLPRWSMFSENR
2) RRNYIR
3) YEYVYEM
1138
30
1119
1151
35
1125