<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33160

Description Uncharacterized protein
SequenceMSMKSGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRCSGCDRVELAVPSGNEFDDDEEDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNFSSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFAGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLAKDNNSLQMKRQEAVVRPNKPANKPSNTNSGPGRPLKQNMGQKVDNESKLQQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLPKQGLGNRNPQLRPGNYNRHWANGRR
Length448
PositionUnknown
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.05
Grand average of hydropathy-0.880
Instability index48.58
Isoelectric point6.32
Molecular weight50160.50
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33160
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.58|      15|      19|     286|     300|       1
---------------------------------------------------------------------------
  286-  300 (25.46/12.84)	KPSV...ENQNIAKRKQQ
  304-  321 (20.12/ 8.92)	EPNVlakDNNSLQMKRQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.57|      21|      45|      96|     118|       2
---------------------------------------------------------------------------
   96-  118 (30.82/33.51)	KESKVNSCRDDhvSNQIVSNFSS
  122-  139 (20.40/13.17)	AEALTDEIEEE...SQVVGEV..
  143-  160 (30.35/23.70)	KEILHNS.RDE..SDSVL..FES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.47|      36|      38|     332|     368|       3
---------------------------------------------------------------------------
  332-  368 (57.45/40.98)	KPSNTNSGPGRPLKQNMGQ.KVD.NESKLQQkSDKAAIN
  370-  407 (50.02/30.74)	KPLNSQHNKLKSSDEDAVQvKLEaTKRKLQE.SYQLAEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33160 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLAKDNNSLQMKRQEAVVRPNKPANKPSNTNSGPGRPLKQNMGQKVDNESKLQQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLPKQGLGNRNPQLRPGNYNRHWANGRR
260
448










Molecular Recognition Features






MoRF SequenceStartStop




1) WRNYFR
11
16