<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33159

Description Uncharacterized protein
SequenceMVMITDLSASLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFNKNNMSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYSHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDAGSSCLSGPEVRQTVSRSSSYRSMQTENQDWSDQASTTDVLTYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVNDLNKCKLEEETRLSEIQLLEEKAIELAKQEKKKYETARREAECARASAEKEAAQRQEAEMKAKHEAKEKEMLERALNGTFQRYRNLTWEEIESATLSFSENLRIGMGGYGTVYKGTFHHTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHGCLVYEYMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNSKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKEVADRARDTVPSVHPAPPNHFICPILKEVMNEPCVAADGYTYDRKAIEEWLQENDKSPITDFPLPNKNLLPNYTLLSAILDWKSK
Length757
PositionTail
OrganismCitrus clementina
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.06
Grand average of hydropathy-0.485
Instability index49.71
Isoelectric point5.93
Molecular weight84620.72
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33159
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.47|      18|      30|     129|     146|       1
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  129-  146 (31.02/16.34)	SVRPSDLGSIGSTKDDSS
  160-  177 (30.44/15.93)	SSSQTDLGSAVASYSHSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.17|      16|     109|     387|     405|       2
---------------------------------------------------------------------------
  387-  405 (21.96/28.49)	FQRYRnLTWEeiESATLSF
  499-  514 (30.21/22.39)	FERYR.IAWE..VASALAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.74|      69|     594|       1|      76|       3
---------------------------------------------------------------------------
    1-   76 (108.29/82.15)	MVMITDLSA..SLAIGHPVGNFIPieqvRDDVA....AaykQEEKW..KTDRLLLPFRNMCAQ..R..RVEVEVKVIESDDVAKAIAD
  596-  676 (89.45/53.86)	MVILQLLTAkpAIAITHKVETAID....EDNLAeildA...QAGDWpiKETKELAALGLSCAElrRkdRPDLKNQVLPVLERLKEVAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.68|      17|      36|     327|     344|       5
---------------------------------------------------------------------------
  327-  344 (23.36/24.09)	EEKAIELAKqEKKKYETA
  366-  382 (29.32/23.81)	EMKAKHEAK.EKEMLERA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33159 with Med32 domain of Kingdom Viridiplantae
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